SRR3549498_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549498_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62629
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	467	0.7456609557872551	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG	319	0.5093487042743777	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC	294	0.4694310942215268	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC	244	0.38959587411582497	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	184	0.29379360998898274	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	116	0.18521771064522824	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	97	0.15488032700506157	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	89	0.14210669178814925	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	77	0.12294623896278083	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	70	0.11176930814798255	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	68	0.1085758993437545	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66	0.10538249053952643	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTC	65	0.10378578613741238	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGGG	30	2.1326687E-6	45.000004	3
ACTAATC	30	2.1326687E-6	45.000004	10
AAGTAGG	20	6.9822365E-4	45.000004	2
TGCACGG	20	6.9822365E-4	45.000004	2
GGCACCG	20	6.9822365E-4	45.000004	8
TACAGGG	30	2.1326687E-6	45.000004	3
GCGACTG	20	6.9822365E-4	45.000004	11
GATATGG	20	6.9822365E-4	45.000004	2
TCCTAGC	30	2.1326687E-6	45.000004	15
GAAGTTG	20	6.9822365E-4	45.000004	9
GACGGGA	30	2.1326687E-6	45.000004	4
GGCGATG	40	6.6393113E-9	45.000004	8
GGCGACT	20	6.9822365E-4	45.000004	10
AAGGGTG	20	6.9822365E-4	45.000004	5
AAGGGCG	20	6.9822365E-4	45.000004	5
TCACGGG	20	6.9822365E-4	45.000004	3
TCTAAGG	20	6.9822365E-4	45.000004	2
GCACGGG	20	6.9822365E-4	45.000004	3
CGGGATG	20	6.9822365E-4	45.000004	6
AGTAAAG	20	6.9822365E-4	45.000004	1