##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549498_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 62629 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.398968528956235 31.0 31.0 34.0 30.0 34.0 2 31.528924300244295 31.0 31.0 34.0 30.0 34.0 3 31.11871497229718 31.0 31.0 34.0 28.0 34.0 4 35.244678982579956 37.0 35.0 37.0 33.0 37.0 5 35.09158696450526 35.0 35.0 37.0 32.0 37.0 6 35.13455427996615 36.0 35.0 37.0 32.0 37.0 7 32.04410097558639 35.0 35.0 37.0 11.0 37.0 8 33.57821456513756 37.0 35.0 37.0 19.0 37.0 9 36.51833815005828 39.0 35.0 39.0 32.0 39.0 10 36.335723067588496 38.0 35.0 39.0 32.0 39.0 11 36.37776429449616 38.0 35.0 39.0 32.0 39.0 12 36.32668572067253 38.0 35.0 39.0 32.0 39.0 13 32.61885069217136 37.0 33.0 39.0 10.0 39.0 14 35.065640517970905 38.0 34.0 40.0 18.0 41.0 15 36.418464289706044 38.0 34.0 40.0 30.0 41.0 16 37.04649603218956 38.0 35.0 40.0 32.0 41.0 17 37.18580849127401 39.0 36.0 40.0 32.0 41.0 18 37.100304970540805 39.0 36.0 40.0 32.0 41.0 19 37.05280301457791 39.0 36.0 40.0 32.0 41.0 20 36.9957687333344 39.0 35.0 40.0 32.0 41.0 21 36.937441121525175 39.0 35.0 40.0 32.0 41.0 22 36.972073640007025 39.0 35.0 40.0 32.0 41.0 23 36.83764709639304 38.0 35.0 40.0 32.0 41.0 24 36.755177314023854 38.0 35.0 40.0 31.0 41.0 25 36.57708090501205 38.0 35.0 40.0 31.0 41.0 26 36.422743457503714 38.0 35.0 40.0 31.0 41.0 27 36.400485398138244 38.0 35.0 40.0 31.0 41.0 28 36.35572977374699 38.0 35.0 40.0 31.0 41.0 29 36.22195787893787 38.0 35.0 40.0 30.0 41.0 30 36.053808938351246 38.0 35.0 40.0 30.0 41.0 31 35.89792268757285 38.0 35.0 40.0 30.0 41.0 32 35.695779910265216 38.0 34.0 40.0 29.0 41.0 33 35.48429641220521 38.0 34.0 40.0 27.0 41.0 34 35.22981366459627 38.0 34.0 40.0 26.0 41.0 35 35.11892254386945 38.0 34.0 40.0 25.0 41.0 36 34.8842868319788 38.0 34.0 40.0 24.0 41.0 37 34.84540707978732 38.0 34.0 40.0 24.0 41.0 38 34.72391384183046 38.0 34.0 40.0 24.0 41.0 39 34.64110875153683 38.0 34.0 40.0 23.0 41.0 40 34.538456625524915 38.0 34.0 40.0 23.0 41.0 41 34.457663382777945 38.0 33.0 40.0 23.0 41.0 42 34.40866052467707 38.0 33.0 40.0 23.0 41.0 43 34.383720001916046 38.0 33.0 40.0 22.0 41.0 44 34.17723418863466 38.0 33.0 40.0 22.0 41.0 45 34.14648166184994 38.0 33.0 40.0 22.0 41.0 46 34.08475306966421 37.0 33.0 40.0 21.0 41.0 47 33.85859585814878 37.0 33.0 40.0 20.0 41.0 48 33.72765013013141 37.0 33.0 40.0 20.0 41.0 49 33.69247473215284 37.0 33.0 40.0 20.0 41.0 50 33.47830877069728 37.0 32.0 40.0 19.0 41.0 51 31.528700761628 35.0 29.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 1.0 13 1.0 14 4.0 15 4.0 16 8.0 17 16.0 18 39.0 19 69.0 20 140.0 21 229.0 22 375.0 23 487.0 24 720.0 25 889.0 26 1065.0 27 1151.0 28 1262.0 29 1398.0 30 1672.0 31 2063.0 32 2834.0 33 3792.0 34 5113.0 35 6406.0 36 6743.0 37 9097.0 38 9902.0 39 7142.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.05178112376056 23.584920723626436 27.789043414392694 15.574254738220313 2 31.303389803445686 28.37663063437066 27.889635791725876 12.430343770457775 3 27.557521276086156 28.03812930112248 31.271455715403405 13.132893707387952 4 24.29385747816507 28.208976672148683 32.812275463443456 14.684890386242794 5 22.157466988136488 32.48495106101007 30.024429577352347 15.333152373501093 6 19.668204825240704 42.58410640438136 27.844928068466686 9.902760701911255 7 72.5622315540724 14.213862587619156 10.64842165769851 2.575484200609941 8 78.63449839531208 7.067013683756726 10.645228248894282 3.653259672036916 9 71.85648820833799 8.60304331859043 13.086589279726644 6.453879193344935 10 29.657187564866117 38.686550958820995 18.912963643040765 12.743297833272127 11 27.873668747704738 26.70488112535726 29.623656772421718 15.79779335451628 12 26.313688546839327 22.8871608999026 33.36473518657491 17.434415366683165 13 19.684171869261842 34.58621405419215 31.847866004566576 13.881748071979436 14 16.765396222197385 33.18271088473391 33.39347586581296 16.658417027255744 15 15.278864423829216 26.59151511280717 42.028453272445674 16.101167190917945 16 16.8468281467052 26.848584521547526 37.07068610388159 19.233901227865687 17 16.47958613421897 24.9916173018889 33.54995289722014 24.978843666671988 18 18.593622762617954 25.1959954653595 36.778489198294714 19.431892573727826 19 21.18986412045538 27.904006131344904 32.86816011751744 18.03796963068227 20 22.310750610739433 26.81984384230947 32.2151080170528 18.65429752989829 21 19.406345303294 29.40171486052787 33.52759903559054 17.66434080058759 22 17.49189672515927 25.015567867920613 31.51734819332897 25.97518721359115 23 15.923933002283288 29.872742659151513 32.532852193073495 21.670472145491704 24 17.557361605645948 26.34721933928372 35.114723211291896 20.98069584377844 25 16.35184978204985 30.225614332018715 33.01026680930559 20.412269076625844 26 15.547110763384374 30.490667262769644 32.50570821823756 21.456513755608427 27 17.164572322725892 30.211243992399687 31.911734180651134 20.712449504223283 28 14.506059493206022 28.4724328984975 37.39960721071708 19.621900397579395 29 16.858005077519998 27.156748471155534 33.703236519823086 22.28200993150138 30 18.99439556754858 27.896022609334338 33.39028245700874 19.719299366108352 31 21.98981302591451 28.23771735138674 29.218093854284753 20.554375768413994 32 21.159526736815213 28.42453176643408 30.945728017372144 19.47021347937856 33 19.977965479250827 26.709671238563605 29.773746986220438 23.538616295965127 34 19.029523064395086 26.990691213335676 31.9644254259209 22.015360296348337 35 19.094987944881765 26.069392773315876 31.68819556435517 23.14742371744719 36 21.279279566973766 26.49890625748455 32.34444107362404 19.87737310191764 37 20.126458988647432 26.851777930351755 33.936355362531735 19.08540771846908 38 17.247600951635825 27.805010458413832 31.578022960609303 23.36936562934104 39 20.32445033450957 24.77446550320139 32.515288444650245 22.385795717638793 40 20.972712321767872 24.435964169953216 31.071867665139152 23.51945584313976 41 18.600009580226413 25.015567867920613 31.570039438598734 24.814383113254245 42 20.064187516964985 25.1736416037299 31.881396797010968 22.880774082294145 43 20.610260422487986 23.370962333743154 33.82618275878587 22.192594484982994 44 18.280668699803606 25.71013428284022 32.87933704833224 23.129859969023936 45 17.99006849861885 27.097670408277313 31.30977662105414 23.60248447204969 46 21.381468648709063 26.688914081336122 30.434782608695656 21.49483466125916 47 18.45630618403615 25.210365804978522 34.21897204170592 22.114355969279405 48 18.762873429242045 25.009181050312158 33.48289131233135 22.74505420811445 49 18.80917785690335 22.95422248479139 35.43885420492104 22.797745453384216 50 18.312602787845886 24.52058950326526 33.75273435628862 23.414073352600234 51 17.785690335148256 24.083092497086014 30.838748822430507 27.29246834533523 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 130.0 1 148.0 2 166.0 3 539.5 4 913.0 5 773.5 6 634.0 7 502.5 8 371.0 9 396.5 10 422.0 11 411.5 12 401.0 13 407.5 14 414.0 15 407.0 16 400.0 17 395.0 18 390.0 19 415.0 20 440.0 21 434.5 22 429.0 23 477.0 24 525.0 25 617.5 26 779.5 27 849.0 28 949.0 29 1049.0 30 1242.5 31 1436.0 32 1584.0 33 1732.0 34 1881.5 35 2031.0 36 2121.0 37 2211.0 38 2495.5 39 2780.0 40 3422.5 41 4065.0 42 4449.5 43 4834.0 44 5322.0 45 5810.0 46 6814.0 47 7818.0 48 7152.0 49 6486.0 50 5963.0 51 5440.0 52 4521.5 53 3603.0 54 2934.0 55 2265.0 56 1871.5 57 1478.0 58 1191.0 59 904.0 60 724.5 61 545.0 62 437.5 63 330.0 64 282.0 65 234.0 66 186.5 67 139.0 68 103.0 69 67.0 70 63.0 71 59.0 72 59.5 73 60.0 74 41.5 75 19.5 76 16.0 77 12.5 78 9.0 79 6.5 80 4.0 81 4.0 82 4.0 83 2.5 84 1.0 85 1.5 86 2.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 62629.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.96485653610947 #Duplication Level Percentage of deduplicated Percentage of total 1 82.40414891646601 56.82990308004279 2 8.686793850713096 11.98166983346373 3 3.7784774958325613 7.817464752750324 4 2.1971661418781254 6.061089910424883 5 1.1043711798481202 3.8081399990419778 6 0.7709761066864235 3.1902153954238455 7 0.3935914058158918 1.9000782385157036 8 0.2315243563622893 1.2773635216912294 9 0.15512131876273386 0.9628127544747641 >10 0.24541581774402665 2.639352376694503 >50 0.018521948508983144 0.9388621884430536 >100 0.013891461381737358 2.5930479490331955 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 467 0.7456609557872551 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG 319 0.5093487042743777 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC 294 0.4694310942215268 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC 244 0.38959587411582497 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 184 0.29379360998898274 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 116 0.18521771064522824 No Hit CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT 97 0.15488032700506157 No Hit GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 89 0.14210669178814925 No Hit CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 77 0.12294623896278083 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 70 0.11176930814798255 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT 68 0.1085758993437545 No Hit CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 66 0.10538249053952643 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTC 65 0.10378578613741238 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24269906912133357 0.0 2 0.0 0.0 0.0 0.7712082262210797 0.0 3 0.0 0.0 0.0 1.0123105909402992 0.0 4 0.0 0.0 0.0 1.393922943045554 0.0 5 0.0 0.0 0.0 2.6553194207156428 0.0 6 0.0 0.0 0.0 3.361062766450047 0.0 7 0.0 0.0 0.0 3.9326829424068723 0.0 8 0.0 0.0 0.0 5.289881684203803 0.0 9 0.0 0.0 0.0 5.920579923038848 0.0 10 0.0 0.0 0.0 7.819061457152437 0.0 11 0.0 0.0 0.0 9.299206437912149 0.0 12 0.0 0.0 0.0 11.124239569528493 0.0 13 0.0 0.0 0.0 11.68468281467052 0.0 14 0.0 0.0 0.0 11.919398361781283 0.0 15 0.0 0.0 0.0 12.390426160404925 0.0 16 0.0 0.0 0.0 13.239872902329592 0.0 17 0.0 0.0 0.0 14.15318782033882 0.0 18 0.0 0.0 0.0 15.650896549521788 0.0 19 0.0 0.0 0.0 16.246467291510324 0.0 20 0.0 0.0 0.0 16.9601941592553 0.0 21 0.0 0.0 0.0 17.68509795781507 0.0 22 0.0 0.0 0.0 18.376470963930448 0.0 23 0.0 0.0 0.0 19.17322646058535 0.0 24 0.0 0.0 0.0 19.76241038496543 0.0 25 0.0 0.0 0.0 20.214277730763705 0.0 26 0.0 0.0 0.0 20.69488575580003 0.0 27 0.0 0.0 0.0 21.17868718964058 0.0 28 0.0 0.0 0.0 21.691229302719186 0.0 29 0.0 0.0 0.0 22.213351642210476 0.0 30 0.0 0.0 0.0 22.840856472241295 0.0 31 0.0 0.0 0.0 23.44760414504463 0.0 32 0.0 0.0 0.0 23.968129780133804 0.0 33 0.0 0.0 0.0 24.59882801896885 0.0 34 0.0 0.0 0.0 25.14170751568762 0.0 35 0.0 0.0 0.0 25.73887496207827 0.0 36 0.0 0.0 0.0 26.240240144342078 0.0 37 0.0 0.0 0.0 26.797489980679877 0.0 38 0.0 0.0 0.0 27.41860799310224 0.0 39 0.0 0.0 0.0 27.991824873461177 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGGG 30 2.1326687E-6 45.000004 3 ACTAATC 30 2.1326687E-6 45.000004 10 AAGTAGG 20 6.9822365E-4 45.000004 2 TGCACGG 20 6.9822365E-4 45.000004 2 GGCACCG 20 6.9822365E-4 45.000004 8 TACAGGG 30 2.1326687E-6 45.000004 3 GCGACTG 20 6.9822365E-4 45.000004 11 GATATGG 20 6.9822365E-4 45.000004 2 TCCTAGC 30 2.1326687E-6 45.000004 15 GAAGTTG 20 6.9822365E-4 45.000004 9 GACGGGA 30 2.1326687E-6 45.000004 4 GGCGATG 40 6.6393113E-9 45.000004 8 GGCGACT 20 6.9822365E-4 45.000004 10 AAGGGTG 20 6.9822365E-4 45.000004 5 AAGGGCG 20 6.9822365E-4 45.000004 5 TCACGGG 20 6.9822365E-4 45.000004 3 TCTAAGG 20 6.9822365E-4 45.000004 2 GCACGGG 20 6.9822365E-4 45.000004 3 CGGGATG 20 6.9822365E-4 45.000004 6 AGTAAAG 20 6.9822365E-4 45.000004 1 >>END_MODULE