SRR3549494_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549494_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	377503
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2496	0.6611867985155084	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTC	921	0.24397157108685227	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	893	0.23655441148812065	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCG	884	0.2341703244742426	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGC	716	0.1896673668818526	No Hit
GCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	483	0.12794600307812123	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGG	20	7.02726E-4	45.000004	2
CACGACT	20	7.02726E-4	45.000004	12
TCGGCAA	20	7.02726E-4	45.000004	21
AACGGGC	20	7.02726E-4	45.000004	4
CCATACT	20	7.02726E-4	45.000004	25
CGGGACG	20	7.02726E-4	45.000004	6
CATACGA	20	7.02726E-4	45.000004	18
TCGAGAA	20	7.02726E-4	45.000004	38
AGGGCGC	80	0.0	45.000004	6
CGGACGG	20	7.02726E-4	45.000004	2
TCACGAC	25	3.8858125E-5	45.0	25
CTCACGT	25	3.8858125E-5	45.0	45
CGTATGA	25	3.8858125E-5	45.0	15
CGACGGT	25	3.8858125E-5	45.0	28
CACGAAA	25	3.8858125E-5	45.0	35
GTATGAC	25	3.8858125E-5	45.0	16
GCGATGC	70	0.0	45.0	9
ATGACCG	25	3.8858125E-5	45.0	18
CGGTCTA	25	3.8858125E-5	45.0	31
GGCGCGA	70	0.0	45.0	8