SRR3549493_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549493_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470348
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4256	0.9048619320162944	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1778	0.37801797817785976	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC	1320	0.28064326838851233	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGC	951	0.20219071836172367	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCG	919	0.1953872451886688	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	576	0.12246251711498721	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	481	0.10226470613248063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	30	2.1627566E-6	45.000004	1
GTTTACG	30	2.1627566E-6	45.000004	1
TTAACGG	30	2.1627566E-6	45.000004	2
CTAGACG	20	7.029032E-4	45.0	1
CGGGTAG	25	3.887279E-5	45.0	6
TTGTGCG	20	7.029032E-4	45.0	1
ACGGGTA	40	6.7993824E-9	45.0	5
GTTACGG	20	7.029032E-4	45.0	2
TGACCGG	20	7.029032E-4	45.0	2
TTGCGAA	20	7.029032E-4	45.0	1
CGATGCG	20	7.029032E-4	45.0	12
CACACCG	25	3.887279E-5	45.0	43
CGCCGGT	25	3.887279E-5	45.0	28
GGCGAAA	20	7.029032E-4	45.0	8
CGGTTTT	840	0.0	42.857143	1
CATACGA	95	0.0	42.63158	18
CGTTTTT	2560	0.0	41.308594	1
CGAAAAA	100	0.0	40.5	22
TACGGGT	50	1.0786607E-9	40.5	4
AACGGGC	50	1.0786607E-9	40.5	4