SRR3549488_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549488_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	420940
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3133	0.7442865966646078	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1296	0.30788235853090706	No Hit
GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	722	0.1715208818358911	No Hit
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT	669	0.1589300137786858	No Hit
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	613	0.14562645507673302	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC	608	0.14443863733548723	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG	515	0.12234522734831568	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	463	0.10999192283935952	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	440	0.10452796122962893	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTA	125	0.0	45.000004	1
AACGGGA	75	0.0	45.000004	4
ACGGTTA	35	1.2094824E-7	45.000004	34
CGAACGG	20	7.028187E-4	45.0	2
TAGCGCG	25	3.8865786E-5	45.0	1
CGATTTA	25	3.8865786E-5	45.0	10
TCGATGG	20	7.028187E-4	45.0	2
GTTCGGG	40	6.7975634E-9	45.0	3
TTAAGCG	25	3.8865786E-5	45.0	1
GTCGTTA	20	7.028187E-4	45.0	14
TATAGCG	20	7.028187E-4	45.0	1
AATAGCG	20	7.028187E-4	45.0	1
TCGACTG	20	7.028187E-4	45.0	1
AGTACGG	40	6.7975634E-9	45.0	2
GCGATAA	30	2.1622127E-6	44.999996	9
TCCGGGA	30	2.1622127E-6	44.999996	4
TAACGGG	85	0.0	42.35294	3
CGGTTTT	480	0.0	41.718746	1
TAATACG	65	0.0	41.53846	12
CGTTTTT	1485	0.0	41.363636	1