SRR3549482_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549482_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551765
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2588	0.4690402617056174	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1062	0.19247324495029586	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGC	834	0.15115130535644705	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	814	0.14752657381312695	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCG	797	0.1444455520013049	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	576	0.10439226844761809	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	557	0.10094877348146403	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACG	25	3.888159E-5	45.000004	26
GCGCATG	25	3.888159E-5	45.000004	1
CGTACAT	25	3.888159E-5	45.000004	35
ATAACGG	25	3.888159E-5	45.000004	2
TAGCGCG	20	7.030095E-4	45.0	1
AATGCGG	45	3.8380676E-10	45.0	2
GCGGGTC	40	6.8048394E-9	45.0	5
CAGTCGA	20	7.030095E-4	45.0	31
CTCACGA	30	2.1634423E-6	44.999996	24
GGTCGTT	30	2.1634423E-6	44.999996	8
CGGTTTA	205	0.0	43.90244	1
TACGGGA	185	0.0	42.567566	4
AGGGCGC	70	0.0	41.785717	6
CACGGGC	65	0.0	41.53846	4
TATGCGG	60	3.6379788E-12	41.249996	2
CGGTTTT	570	0.0	41.05263	1
TACGAAT	50	1.0786607E-9	40.500004	12
CGACCTC	45	1.9252184E-8	40.0	12
ACGATAG	45	1.9252184E-8	40.0	1
TTAAGCG	45	1.9252184E-8	40.0	1