SRR3549480_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549480_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	482319
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4523	0.9377611083121338	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGC	3762	0.7799817133473904	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCG	3293	0.6827431637567668	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	3032	0.6286295999120913	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1848	0.38314891181977073	No Hit
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1085	0.2249548535305472	No Hit
GAACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCT	854	0.17706123955307587	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTC	821	0.1702192946991514	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCT	795	0.16482867148090785	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	546	0.11320308758311406	No Hit
CTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGCT	511	0.10594647940470933	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTA	483	0.10014119286198553	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGTG	25	3.8874274E-5	45.0	23
GCGCGAC	25	3.8874274E-5	45.0	9
CGGCAAC	25	3.8874274E-5	45.0	9
CGCGACC	25	3.8874274E-5	45.0	10
ACGATTG	20	7.029212E-4	45.0	1
TCGTGAG	20	7.029212E-4	45.0	1
GAAACGC	25	3.8874274E-5	45.0	12
GCGGCTA	20	7.029212E-4	45.0	24
CGATGAT	20	7.029212E-4	45.0	10
GGCGCGA	25	3.8874274E-5	45.0	8
CGATAGA	25	3.8874274E-5	45.0	10
CGGTTTT	730	0.0	43.458904	1
GGACCGA	210	0.0	42.857143	8
AGGGCCG	95	0.0	42.63158	6
CGGTTTA	180	0.0	42.5	1
AACGGGC	60	3.6379788E-12	41.250004	4
CGTTTTT	2025	0.0	41.11111	1
GTAGCGG	105	0.0	40.714287	2
CGGGAGC	50	1.0786607E-9	40.5	6
ACGGGAC	90	0.0	40.0	5