SRR3549479_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549479_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	371841
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2169	0.583313835752378	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	936	0.2517204934367108	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	544	0.14629909020253282	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	514	0.1382311256693049	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	462	0.12424665381170984	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	433	0.11644762142958953	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	392	0.10542140323417805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCA	25	3.8856975E-5	45.000004	23
CGACGGT	25	3.8856975E-5	45.000004	28
CGGTTTA	65	0.0	45.000004	1
TACGGGT	30	2.1615251E-6	45.000004	4
CGGTCTA	25	3.8856975E-5	45.000004	31
ATAACGC	30	2.1615251E-6	45.000004	11
GGCGAGC	25	3.8856975E-5	45.000004	9
GTAACGG	35	1.2089549E-7	45.000004	2
AGTAACG	25	3.8856975E-5	45.000004	1
TCGCCGT	20	7.0271234E-4	45.0	25
ATGGGTA	80	0.0	45.0	5
ACACGCG	45	3.8380676E-10	45.0	36
GCACGTA	20	7.0271234E-4	45.0	37
TCGGGCG	20	7.0271234E-4	45.0	5
ACGGGTC	20	7.0271234E-4	45.0	5
GCTCTCG	20	7.0271234E-4	45.0	17
GAGCGCT	20	7.0271234E-4	45.0	36
CATACGG	20	7.0271234E-4	45.0	2
TTACGCT	20	7.0271234E-4	45.0	14
CACGTAA	20	7.0271234E-4	45.0	38