SRR3549477_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549477_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295854
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1257	0.4248717272708836	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	485	0.1639322098061882	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	30	2.160019E-6	45.000004	6
CGACGGT	30	2.160019E-6	45.000004	28
CGGTTTA	60	0.0	45.000004	1
ATTCGGG	30	2.160019E-6	45.000004	3
TCGTTCC	20	7.024786E-4	45.0	44
CTCACGT	25	3.8837607E-5	45.0	45
AATCACG	20	7.024786E-4	45.0	1
ATAGCGG	25	3.8837607E-5	45.0	2
TAACGCA	20	7.024786E-4	45.0	13
CGTTCCC	20	7.024786E-4	45.0	45
AACGGGC	45	3.8198777E-10	45.0	4
CTACGGG	35	1.2078453E-7	45.0	3
TCGTAGA	20	7.024786E-4	45.0	42
ATAACGC	20	7.024786E-4	45.0	12
CGTTTGG	35	1.2078453E-7	45.0	2
GTAACGG	35	1.2078453E-7	45.0	2
CTAGCGG	35	1.2078453E-7	45.0	2
CGGTTTT	190	0.0	42.63158	1
TAACGGG	80	0.0	42.1875	3
TACGGGA	155	0.0	42.096775	4