SRR3549474_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549474_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296697
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2227	0.7505974108265334	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	905	0.3050249918266784	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTGCA	30	2.160039E-6	45.000004	19
CACGTGC	30	2.160039E-6	45.000004	18
TCACGAC	25	3.883786E-5	45.0	25
CTTAACG	20	7.024817E-4	45.0	18
CGGGTGA	20	7.024817E-4	45.0	6
CTCACGA	25	3.883786E-5	45.0	24
ATTAGCG	20	7.024817E-4	45.0	1
CGACGCG	20	7.024817E-4	45.0	15
TGCGGGT	35	1.2078635E-7	45.0	4
CTGCGGG	45	3.8198777E-10	45.0	3
GTTACGG	20	7.024817E-4	45.0	2
AATGCGG	45	3.8198777E-10	45.0	2
GCCGATA	20	7.024817E-4	45.0	9
CTACGGG	35	1.2078635E-7	45.0	3
GTATGCG	20	7.024817E-4	45.0	1
CTTTGCG	20	7.024817E-4	45.0	1
AACGACG	20	7.024817E-4	45.0	13
GCGATGA	35	1.2078635E-7	45.0	9
CAATGCG	25	3.883786E-5	45.0	1
GCTACGA	25	3.883786E-5	45.0	10