SRR3549469_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549469_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443218
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3072	0.6931126443420619	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1262	0.28473572824208404	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	720	0.16244827601767076	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	658	0.14845967447170466	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	535	0.1207080939853526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGT	20	7.028591E-4	45.0	14
CTAAGCG	25	3.8869133E-5	45.0	1
ACGGGTC	25	3.8869133E-5	45.0	5
TATTGCG	20	7.028591E-4	45.0	1
CGCAGGA	20	7.028591E-4	45.0	3
TATACGG	40	6.7993824E-9	45.0	2
TCGCGCG	20	7.028591E-4	45.0	1
TCGGGTG	30	2.1624728E-6	44.999996	5
ACGGGAT	140	0.0	43.39286	5
GCGATGC	95	0.0	42.63158	9
CGGTTTA	160	0.0	42.1875	1
CACAACG	60	3.6379788E-12	41.249996	12
CGGTTTT	550	0.0	40.909092	1
TAGGGCG	240	0.0	40.312496	5
GCGGGTA	90	0.0	40.0	5
CGGGCGA	90	0.0	40.0	6
CGTTTTT	1625	0.0	39.32308	1
GGCGATG	390	0.0	38.653847	8
CGATCAT	35	6.239603E-6	38.57143	10
GTTGATC	190	0.0	37.894737	16