SRR3549467_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549467_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295984
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2070	0.6993621276825774	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	826	0.2790691388723715	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	425	0.1435888426401427	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	398	0.1344667279312395	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	398	0.1344667279312395	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	395	0.13345315963025028	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	351	0.1185874912157414	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	331	0.11183036920914644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	35	1.2078453E-7	45.000004	21
CTACGGG	35	1.2078453E-7	45.000004	3
AGACACG	35	1.2078453E-7	45.000004	24
TGATCGC	20	7.0247904E-4	45.0	28
TCGTTGA	50	2.1827873E-11	45.0	24
CTCACGA	40	6.7848305E-9	45.0	24
ACTGCGG	20	7.0247904E-4	45.0	2
GATCGCC	20	7.0247904E-4	45.0	29
CGACGGT	40	6.7848305E-9	45.0	28
GCGCGAC	100	0.0	45.0	9
GTCTAAC	20	7.0247904E-4	45.0	33
AGGCGAT	40	6.7848305E-9	45.0	7
GCCGATC	25	3.8837643E-5	45.0	9
CTAACGG	20	7.0247904E-4	45.0	2
TACGAAT	25	3.8837643E-5	45.0	12
GCCCTCG	25	3.8837643E-5	45.0	13
GACGGGT	25	3.8837643E-5	45.0	4
CATACGA	40	6.7848305E-9	45.0	18
CGGTCTA	40	6.7848305E-9	45.0	31
GCTACGA	25	3.8837643E-5	45.0	10