SRR3549466_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549466_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	366476
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2901	0.7915934467741408	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1182	0.3225313526670232	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTC	743	0.20274178936683437	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCG	732	0.19974022855521234	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGC	618	0.16863314378022026	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	589	0.1607199380041258	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	415	0.11324070334755891	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	30	2.1614396E-6	45.000004	24
CGGTTTA	105	0.0	45.000004	1
ACTCCCG	30	2.1614396E-6	45.000004	13
GTTTGCG	20	7.026992E-4	45.0	1
CGTGGGT	20	7.026992E-4	45.0	4
CGGCGAA	25	3.8855876E-5	45.0	35
TCGCAGG	20	7.026992E-4	45.0	2
GACACGG	20	7.026992E-4	45.0	2
CGCATGG	45	3.8380676E-10	45.0	2
AAGACCG	20	7.026992E-4	45.0	24
TTCGTAA	20	7.026992E-4	45.0	1
GTAGCGG	20	7.026992E-4	45.0	2
AACGCGG	20	7.026992E-4	45.0	2
TTAACGG	20	7.026992E-4	45.0	2
CCGAATC	20	7.026992E-4	45.0	34
GGCGAAC	20	7.026992E-4	45.0	8
CGGCTAC	95	0.0	42.63158	25
CGGTTTT	630	0.0	42.499996	1
ATGGTCC	85	0.0	42.352943	11
CGTTTTT	1650	0.0	41.454548	1