SRR3549462_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549462_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	261551
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3900	1.4911049852610008	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1499	0.5731195827964718	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	714	0.27298691268624475	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	667	0.2550171859407917	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	518	0.19804932881158935	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	455	0.1739622482804501	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	426	0.1628745445438939	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	394	0.15063983697252162	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	389	0.14872816391449467	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	367	0.14031680245917622	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	298	0.11393571425840467	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGCTCA	30	2.1590513E-6	45.000004	7
AATGGGC	60	0.0	45.000004	4
CACTGGG	25	3.8825172E-5	45.000004	3
TCAATCG	25	3.8825172E-5	45.000004	30
TAGGGCG	60	0.0	45.000004	5
CAATCGC	25	3.8825172E-5	45.000004	31
ATCGCTA	25	3.8825172E-5	45.000004	33
ATACATG	25	3.8825172E-5	45.000004	42
AATCGCT	30	2.1590513E-6	45.000004	32
ATGGGCG	45	3.8198777E-10	45.0	5
ATCTAAT	20	7.023287E-4	45.0	22
CGGTTTA	140	0.0	45.0	1
TCTTAGG	45	3.8198777E-10	45.0	2
ATAGCGG	35	1.2071177E-7	45.0	2
TAAACGG	20	7.023287E-4	45.0	2
TACGGTT	35	1.2071177E-7	45.0	33
CCTCGTG	55	1.8189894E-12	45.0	15
GGGACGT	20	7.023287E-4	45.0	7
CTACGGG	55	1.8189894E-12	45.0	3
ACTACGG	20	7.023287E-4	45.0	2