SRR3549460_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549460_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	354343
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3898	1.100064062222197	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCG	3010	0.8494594220853805	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGC	2194	0.6191740770947923	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCGTCTTC	2129	0.6008302689766696	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1467	0.41400563860440304	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCGTCT	744	0.20996604984435985	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCGTC	685	0.19331551632175603	No Hit
GCTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCGTCTTCTGC	573	0.16170772387206747	TruSeq Adapter, Index 21 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCGTCTTCT	558	0.15747453738326989	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTATGCCGTCTTT	509	0.14364612818653114	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	502	0.1416706411584256	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	486	0.1371552422370415	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	480	0.1354619676415225	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	470	0.13263984331565742	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	446	0.1258667449335813	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	412	0.11627152222564013	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	379	0.10695851195028545	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGCGGTTTCGTA	364	0.10272532546148788	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCGG	25	3.8853243E-5	45.000004	2
CTCACGA	25	3.8853243E-5	45.000004	24
CTCGTGT	25	3.8853243E-5	45.000004	16
GATGTAC	20	7.026673E-4	45.000004	15
TTGTGCG	25	3.8853243E-5	45.000004	1
CACGGTA	20	7.026673E-4	45.000004	13
CGACGGT	20	7.026673E-4	45.000004	28
GCGCGAC	40	6.7921064E-9	45.000004	9
TTTCGAG	20	7.026673E-4	45.000004	1
GGCCGAT	20	7.026673E-4	45.000004	8
CTAAGTC	20	7.026673E-4	45.000004	33
CGCGACC	35	1.2087548E-7	45.000004	10
TATGCGG	20	7.026673E-4	45.000004	2
CGCTGAA	20	7.026673E-4	45.000004	37
ACGGGTA	20	7.026673E-4	45.000004	5
ACGGGCG	35	1.2087548E-7	45.000004	5
TCGTGTA	25	3.8853243E-5	45.000004	17
ACGGCAG	20	7.026673E-4	45.000004	8
ACGTGGC	25	3.8853243E-5	45.000004	26
CGGGAAC	50	2.1827873E-11	45.000004	6