SRR3549457_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549457_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	233646
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4515	1.9324105698364191	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1764	0.7549883156570196	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCG	974	0.41686996567456747	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGC	771	0.32998638966641847	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTC	769	0.32913039384367804	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	722	0.309014492009279	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	615	0.2632187154926684	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	586	0.25080677606293283	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	551	0.23582684916497607	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	535	0.228978882583053	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	490	0.20971897657139435	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	480	0.20543899745769242	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	478	0.204583001634952	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	363	0.15536324182737987	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	301	0.12882737132242794	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	283	0.12112340891776449	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATCA	30	2.1580527E-6	45.000004	29
GGCACCG	35	1.206372E-7	45.000004	8
CGCATGG	30	2.1580527E-6	45.000004	2
CTAGGGT	35	1.206372E-7	45.000004	4
GCATATC	30	2.1580527E-6	45.000004	28
CGGGTAT	20	7.0217386E-4	45.0	6
GACAGCG	20	7.0217386E-4	45.0	1
CTCACGA	20	7.0217386E-4	45.0	24
CAACGCG	20	7.0217386E-4	45.0	1
CGACGGT	20	7.0217386E-4	45.0	28
TAGACGG	20	7.0217386E-4	45.0	2
CGGTTTA	175	0.0	45.0	1
TGGAAAG	40	6.7757355E-9	45.0	1
GACCGAT	85	0.0	45.0	9
GGCCGAT	20	7.0217386E-4	45.0	8
TACGGGT	40	6.7757355E-9	45.0	4
TCGATCA	20	7.0217386E-4	45.0	17
ACGGGTA	40	6.7757355E-9	45.0	5
GTAATAG	45	3.8198777E-10	45.0	1
TCTACTA	20	7.0217386E-4	45.0	36