SRR3549452_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549452_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60928
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	996	1.634716386554622	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	388	0.6368172268907563	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	268	0.43986344537815125	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	249	0.4086790966386555	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC	237	0.388983718487395	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	142	0.23306197478991597	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	135	0.22157300420168066	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	130	0.21336659663865545	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	114	0.1871060924369748	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	110	0.18054096638655462	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	102	0.16741071428571427	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97	0.15920430672268907	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	83	0.13622636554621848	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	82	0.13458508403361344	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	68	0.11160714285714285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGACTAA	45	3.7289283E-10	45.000004	8
TTGCGGG	30	2.1317046E-6	45.000004	3
CGGTTTA	45	3.7289283E-10	45.000004	1
TAAGGGC	30	2.1317046E-6	45.000004	4
GATGGCC	20	6.9807336E-4	45.0	9
GAGCGGG	25	3.8473132E-5	45.0	3
TGCACCA	25	3.8473132E-5	45.0	28
TATGCCC	25	3.8473132E-5	45.0	10
TACGGGA	20	6.9807336E-4	45.0	4
CTAAGGG	20	6.9807336E-4	45.0	3
TCGTGTA	25	3.8473132E-5	45.0	17
AGGGACC	25	3.8473132E-5	45.0	6
CACCTTC	25	3.8473132E-5	45.0	33
AGAGCGG	25	3.8473132E-5	45.0	2
CGGGATT	20	6.9807336E-4	45.0	6
ATGCCCT	25	3.8473132E-5	45.0	11
GGGACTA	40	6.6338544E-9	45.0	7
CCATAGC	20	6.9807336E-4	45.0	35
GGGAATC	25	3.8473132E-5	45.0	7
GTGCGGG	20	6.9807336E-4	45.0	3