##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549452_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 60928 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.607027967436974 31.0 31.0 34.0 30.0 34.0 2 31.688977153361346 31.0 31.0 34.0 30.0 34.0 3 31.000935530462186 31.0 31.0 34.0 27.0 34.0 4 35.316094406512605 37.0 35.0 37.0 33.0 37.0 5 35.29185267857143 37.0 35.0 37.0 33.0 37.0 6 35.35148043592437 37.0 35.0 37.0 33.0 37.0 7 32.07551536239496 37.0 35.0 37.0 10.0 37.0 8 33.643546481092436 37.0 35.0 37.0 18.0 37.0 9 36.70076155462185 39.0 35.0 39.0 32.0 39.0 10 36.67445181197479 38.0 35.0 39.0 32.0 39.0 11 36.675912552521005 39.0 35.0 39.0 32.0 39.0 12 36.6039587710084 38.0 35.0 39.0 32.0 39.0 13 32.88950892857143 38.0 35.0 39.0 10.0 39.0 14 35.46226693802521 39.0 35.0 40.0 18.0 41.0 15 36.80795365021008 39.0 35.0 41.0 30.0 41.0 16 37.435005252100844 39.0 36.0 41.0 32.0 41.0 17 37.53415506827731 39.0 36.0 41.0 33.0 41.0 18 37.43557970063025 39.0 36.0 40.0 33.0 41.0 19 37.39461331407563 39.0 36.0 40.0 32.0 41.0 20 37.25756630777311 39.0 35.0 40.0 32.0 41.0 21 37.20488117121849 39.0 35.0 40.0 32.0 41.0 22 37.199103860294116 39.0 35.0 40.0 33.0 41.0 23 37.11255908613445 39.0 35.0 40.0 32.0 41.0 24 36.98852744222689 39.0 35.0 40.0 32.0 41.0 25 36.80621389180672 38.0 35.0 40.0 32.0 41.0 26 36.66041885504202 38.0 35.0 40.0 31.0 41.0 27 36.68443080357143 38.0 35.0 40.0 32.0 41.0 28 36.57922465861345 38.0 35.0 40.0 31.0 41.0 29 36.510783219537814 38.0 35.0 40.0 31.0 41.0 30 36.357077205882355 38.0 35.0 40.0 31.0 41.0 31 36.198890493697476 38.0 35.0 40.0 30.0 41.0 32 35.89369419642857 38.0 35.0 40.0 30.0 41.0 33 35.63105632878151 38.0 35.0 40.0 28.0 41.0 34 35.33482142857143 38.0 34.0 40.0 26.0 41.0 35 35.124671743697476 38.0 34.0 40.0 25.0 41.0 36 34.89556525735294 38.0 34.0 40.0 24.0 41.0 37 34.795069590336134 38.0 34.0 40.0 23.0 41.0 38 34.67814469537815 38.0 34.0 40.0 23.0 41.0 39 34.51797203256302 38.0 34.0 40.0 22.0 41.0 40 34.39523700105042 38.0 33.0 40.0 22.0 41.0 41 34.402245273109244 38.0 34.0 40.0 21.0 41.0 42 34.36004792542017 38.0 33.0 40.0 21.0 41.0 43 34.32078847163866 38.0 33.0 40.0 21.0 41.0 44 34.12549238445378 38.0 33.0 40.0 20.0 41.0 45 34.138540572478995 38.0 33.0 40.0 20.0 41.0 46 33.97546284138655 37.0 33.0 40.0 20.0 41.0 47 33.764410451680675 37.0 33.0 40.0 18.0 41.0 48 33.683659401260506 37.0 33.0 40.0 18.0 41.0 49 33.61173844537815 37.0 33.0 40.0 18.0 41.0 50 33.48156840861345 37.0 33.0 40.0 18.0 41.0 51 31.665523240546218 35.0 29.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 3.0 12 0.0 13 2.0 14 1.0 15 2.0 16 3.0 17 15.0 18 39.0 19 63.0 20 93.0 21 175.0 22 268.0 23 425.0 24 634.0 25 1005.0 26 1184.0 27 1290.0 28 1336.0 29 1297.0 30 1579.0 31 1887.0 32 2443.0 33 3363.0 34 4857.0 35 5855.0 36 5916.0 37 8614.0 38 9998.0 39 8578.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.6577599789916 22.267266281512605 25.52521008403361 18.549763655462183 2 34.47019432773109 27.85090598739496 25.54654674369748 12.132352941176471 3 30.252100840336134 26.02908350840336 31.97544642857143 11.743369222689076 4 26.40329569327731 24.983587184873947 35.34827993697479 13.264837184873949 5 23.16340598739496 30.865940126050422 31.54871323529412 14.421940651260504 6 20.763852415966387 41.36193539915966 29.53486081932773 8.339351365546218 7 68.88950892857143 15.134256827731093 13.831079306722687 2.14515493697479 8 74.81289390756302 8.224461659663866 14.159335609243698 2.8033088235294117 9 68.16077993697479 9.324120273109243 16.173188025210084 6.341911764705882 10 34.338891806722685 30.47203256302521 23.511357668067227 11.677717962184873 11 29.643185399159666 25.154280462184875 30.852809873949578 14.349724264705882 12 28.63215598739496 22.533153886554622 33.62001050420168 15.21467962184874 13 19.537815126050422 34.586725315126046 30.757615546218485 15.117844012605042 14 16.032037815126053 32.77803308823529 33.56748949579832 17.622439600840337 15 17.297465861344538 27.371651785714285 40.61351102941176 14.717371323529413 16 18.249409138655462 26.053702731092436 38.309151785714285 17.387736344537817 17 18.052455357142858 26.603532037815125 34.45706407563025 20.886948529411764 18 18.538274684873947 28.673188025210084 35.658482142857146 17.130055147058822 19 22.889311974789916 27.676930147058826 32.671349789915965 16.762408088235293 20 23.233981092436977 26.061909138655466 35.294117647058826 15.40999212184874 21 20.647321428571427 28.535320378151262 34.87066701680672 15.946691176470587 22 19.268644957983195 25.787815126050422 34.204306722689076 20.73923319327731 23 18.90920430672269 29.08514968487395 34.32576155462185 17.679884453781515 24 18.54155724789916 26.779149159663866 36.723673844537814 17.95561974789916 25 17.885044642857142 30.89876575630252 33.7250525210084 17.491137079831933 26 16.503085609243698 31.35340073529412 33.05540966386555 19.08810399159664 27 18.735228466386555 30.388327205882355 33.475577731092436 17.400866596638657 28 15.759585084033615 30.099461659663866 37.57057510504202 16.570378151260503 29 18.123030462184875 27.798384978991596 35.10372899159664 18.974855567226893 30 17.935924369747898 30.2734375 34.27488182773109 17.51575630252101 31 22.039128151260503 29.14423581932773 31.635701155462186 17.180934873949578 32 21.323529411764707 29.981289390756306 32.38740808823529 16.307773109243698 33 19.761029411764707 30.88891806722689 30.55902048319328 18.791032037815125 34 18.845194327731093 30.238970588235293 32.592568277310924 18.32326680672269 35 19.808626575630253 28.3859637605042 32.02796743697479 19.777442226890756 36 20.92469800420168 31.860556722689076 29.305081407563026 17.909663865546218 37 18.965007878151262 31.335346638655466 32.84696691176471 16.852678571428573 38 18.23956144957983 32.18224789915966 30.24717699579832 19.331013655462183 39 20.392922794117645 29.37565651260504 31.65703781512605 18.574382878151262 40 19.608390231092436 29.920561974789916 32.64016544117647 17.830882352941178 41 17.72091649159664 29.936974789915965 31.73253676470588 20.609571953781515 42 18.677783613445378 30.21763392857143 30.977547268907564 20.12703518907563 43 20.43231355042017 27.69170168067227 30.929950105042014 20.946034663865547 44 19.015887605042018 29.44951418067227 31.287749474789916 20.2468487394958 45 18.54483981092437 31.284466911764707 29.41832983193277 20.75236344537815 46 19.337578781512605 32.810858718487395 29.093356092436974 18.758206407563023 47 18.682707457983195 28.582917542016805 33.370535714285715 19.363839285714285 48 18.690913865546218 28.507418592436974 32.52691701680672 20.274750525210084 49 18.746717436974787 27.64410451680672 34.14522058823529 19.463957457983195 50 17.08409926470588 29.155724789915965 33.48542542016807 20.274750525210084 51 17.584690126050422 27.461922268907564 31.586462710084035 23.366924894957982 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 71.0 1 109.5 2 148.0 3 902.5 4 1657.0 5 1429.0 6 1201.0 7 900.0 8 599.0 9 571.5 10 544.0 11 521.5 12 499.0 13 498.5 14 498.0 15 448.0 16 398.0 17 390.0 18 382.0 19 362.5 20 343.0 21 390.5 22 438.0 23 479.5 24 521.0 25 671.0 26 947.0 27 1073.0 28 1271.0 29 1469.0 30 1636.5 31 1804.0 32 1982.0 33 2160.0 34 2355.5 35 2551.0 36 2517.0 37 2483.0 38 2741.5 39 3000.0 40 3540.5 41 4081.0 42 4395.0 43 4709.0 44 4858.0 45 5007.0 46 5537.5 47 6068.0 48 5488.5 49 4909.0 50 4475.5 51 4042.0 52 3532.0 53 3022.0 54 2498.0 55 1974.0 56 1738.5 57 1503.0 58 1307.0 59 1111.0 60 925.5 61 740.0 62 603.5 63 467.0 64 366.5 65 266.0 66 203.5 67 141.0 68 111.5 69 82.0 70 70.0 71 58.0 72 45.5 73 33.0 74 27.0 75 19.5 76 18.0 77 12.5 78 7.0 79 6.5 80 6.0 81 3.0 82 0.0 83 1.0 84 2.0 85 1.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 60928.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.66366859243697 #Duplication Level Percentage of deduplicated Percentage of total 1 78.98373250148238 50.28394170168067 2 10.183299389002038 12.966123949579833 3 4.668849416071566 8.917082457983193 4 2.6553919925752147 6.762079831932772 5 1.5030034288071359 4.784335609243697 6 0.7940395472943361 3.0330882352941178 7 0.4485807832117353 1.9990808823529411 8 0.2706953002139782 1.3786764705882353 9 0.10827812008559128 0.6204044117647058 >10 0.3428807136043724 3.917738970588235 >50 0.012890252391141818 0.6253282563025211 >100 0.025780504782283636 3.077402836134454 >500 0.0025780504782283637 1.634716386554622 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 996 1.634716386554622 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 388 0.6368172268907563 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG 268 0.43986344537815125 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC 249 0.4086790966386555 No Hit GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC 237 0.388983718487395 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 142 0.23306197478991597 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 135 0.22157300420168066 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 130 0.21336659663865545 No Hit CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 114 0.1871060924369748 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 110 0.18054096638655462 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 102 0.16741071428571427 No Hit CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 97 0.15920430672268907 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 83 0.13622636554621848 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 82 0.13458508403361344 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 68 0.11160714285714285 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09847689075630252 0.0 2 0.0 0.0 0.0 0.38570115546218486 0.0 3 0.0 0.0 0.0 0.48417804621848737 0.0 4 0.0 0.0 0.0 0.7352941176470589 0.0 5 0.0 0.0 0.0 1.6265099789915967 0.0 6 0.0 0.0 0.0 1.9055278361344539 0.0 7 0.0 0.0 0.0 2.1779805672268906 0.0 8 0.0 0.0 0.0 2.7179621848739495 0.0 9 0.0 0.0 0.0 2.895220588235294 0.0 10 0.0 0.0 0.0 3.824185924369748 0.0 11 0.0 0.0 0.0 4.351037289915967 0.0 12 0.0 0.0 0.0 5.345653886554622 0.0 13 0.0 0.0 0.0 5.604976365546219 0.0 14 0.0 0.0 0.0 5.726431197478991 0.0 15 0.0 0.0 0.0 5.948004201680672 0.0 16 0.0 0.0 0.0 6.333705357142857 0.0 17 0.0 0.0 0.0 6.701352415966387 0.0 18 0.0 0.0 0.0 7.160911239495798 0.0 19 0.0 0.0 0.0 7.453059348739496 0.0 20 0.0 0.0 0.0 7.743566176470588 0.0 21 0.0 0.0 0.0 8.086594012605042 0.0 22 0.0 0.0 0.0 8.531381302521009 0.0 23 0.0 0.0 0.0 8.992581407563025 0.0 24 0.0 0.0 0.0 9.317555147058824 0.0 25 0.0 0.0 0.0 9.611344537815127 0.0 26 0.0 0.0 0.0 9.913340336134453 0.0 27 0.0 0.0 0.0 10.239955357142858 0.0 28 0.0 0.0 0.0 10.584624474789916 0.0 29 0.0 0.0 0.0 10.921087184873949 0.0 30 0.0 0.0 0.0 11.305147058823529 0.0 31 0.0 0.0 0.0 11.695772058823529 0.0 32 0.0 0.0 0.0 12.068342962184873 0.0 33 0.0 0.0 0.0 12.450761554621849 0.0 34 0.001641281512605042 0.0 0.0 12.87749474789916 0.0 35 0.001641281512605042 0.0 0.0 13.296021533613445 0.0 36 0.001641281512605042 0.0 0.0 13.801536239495798 0.0 37 0.001641281512605042 0.0 0.0 14.202008928571429 0.0 38 0.001641281512605042 0.0 0.0 14.645154936974789 0.0 39 0.001641281512605042 0.0 0.0 15.135898109243698 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGACTAA 45 3.7289283E-10 45.000004 8 TTGCGGG 30 2.1317046E-6 45.000004 3 CGGTTTA 45 3.7289283E-10 45.000004 1 TAAGGGC 30 2.1317046E-6 45.000004 4 GATGGCC 20 6.9807336E-4 45.0 9 GAGCGGG 25 3.8473132E-5 45.0 3 TGCACCA 25 3.8473132E-5 45.0 28 TATGCCC 25 3.8473132E-5 45.0 10 TACGGGA 20 6.9807336E-4 45.0 4 CTAAGGG 20 6.9807336E-4 45.0 3 TCGTGTA 25 3.8473132E-5 45.0 17 AGGGACC 25 3.8473132E-5 45.0 6 CACCTTC 25 3.8473132E-5 45.0 33 AGAGCGG 25 3.8473132E-5 45.0 2 CGGGATT 20 6.9807336E-4 45.0 6 ATGCCCT 25 3.8473132E-5 45.0 11 GGGACTA 40 6.6338544E-9 45.0 7 CCATAGC 20 6.9807336E-4 45.0 35 GGGAATC 25 3.8473132E-5 45.0 7 GTGCGGG 20 6.9807336E-4 45.0 3 >>END_MODULE