SRR3549451_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549451_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223136
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4646	2.0821382475261725	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1927	0.8635988813996844	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCG	1238	0.554818585974473	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	1201	0.5382367704001148	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC	912	0.4087193460490463	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	541	0.24245303312777858	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	526	0.23573067546249823	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	476	0.21332281657823032	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTC	383	0.17164419905349204	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	355	0.15909579807830201	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	341	0.15282159759070701	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	323	0.14475476839237056	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	272	0.12189875233041732	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	268	0.1201061236196759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCT	20	7.0210535E-4	45.000004	6
ACACGGG	20	7.0210535E-4	45.000004	3
CAACGCA	20	7.0210535E-4	45.000004	17
TGGACGG	20	7.0210535E-4	45.000004	2
TGGGTCC	40	6.7720975E-9	45.000004	6
GTCTCGT	40	6.7720975E-9	45.000004	27
ATAGCGG	35	1.2060445E-7	45.000004	2
CCTCGGG	20	7.0210535E-4	45.000004	3
ACGGGTA	20	7.0210535E-4	45.000004	5
ACGGGGC	20	7.0210535E-4	45.000004	5
TATTGCG	35	1.2060445E-7	45.000004	1
GGGACCG	70	0.0	45.000004	7
ACAGGCG	20	7.0210535E-4	45.000004	33
CCTCCGC	20	7.0210535E-4	45.000004	45
AACGCAA	20	7.0210535E-4	45.000004	18
GCCTCCG	20	7.0210535E-4	45.000004	44
GTACTCC	20	7.0210535E-4	45.000004	21
CAAGCGA	20	7.0210535E-4	45.000004	15
TATAGCG	20	7.0210535E-4	45.000004	1
CGCACGC	20	7.0210535E-4	45.000004	25