SRR3549450_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549450_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	213056
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6226	2.922236407329528	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2318	1.0879768699309103	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGC	1654	0.7763217182337038	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCG	1538	0.7218759387203365	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTC	1337	0.6275345449083809	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	977	0.45856488434965453	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	776	0.36422349053769904	No Hit
CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT	761	0.3571830880144187	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	645	0.30273730850105135	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	614	0.28818714328627215	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	594	0.27879993992189844	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCT	488	0.22904776209071795	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTC	396	0.18586662661459896	No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCT	355	0.16662285971763294	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	345	0.16192925803544608	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTA	271	0.12719660558726345	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCC	254	0.1192174827275458	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	232	0.10889155902673475	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGAATTA	30	2.1571523E-6	45.000004	8
ATAGGAT	30	2.1571523E-6	45.000004	5
TCCTGTA	60	0.0	45.000004	11
CGGTTTA	180	0.0	45.000004	1
TACGGGC	30	2.1571523E-6	45.000004	4
CGTTAGG	30	2.1571523E-6	45.000004	2
AGGCACA	30	2.1571523E-6	45.000004	16
ACAACGA	25	3.8800776E-5	45.0	13
AATCCCC	20	7.0203404E-4	45.0	45
CACGGGA	20	7.0203404E-4	45.0	4
CAACGAG	25	3.8800776E-5	45.0	14
GGGTCTA	35	1.205699E-7	45.0	7
GACCGAT	40	6.7702786E-9	45.0	9
TGAGTAT	20	7.0203404E-4	45.0	31
CGACAAT	20	7.0203404E-4	45.0	20
ACGGGAG	25	3.8800776E-5	45.0	5
GACTTCT	20	7.0203404E-4	45.0	14
GGGACCG	40	6.7702786E-9	45.0	7
CTACGGG	25	3.8800776E-5	45.0	3
TACGAGG	20	7.0203404E-4	45.0	2