SRR3549447_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549447_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	135150
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1231	0.9108398076211617	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	748	0.5534591194968553	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	666	0.4927857935627081	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	487	0.3603403625601184	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	347	0.25675175730669625	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	258	0.19089900110987792	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	252	0.1864594894561598	No Hit
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT	248	0.18349981502034776	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	227	0.16796152423233446	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	220	0.16278209396966334	No Hit
CCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	194	0.14354421013688495	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	193	0.14280429152793195	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG	190	0.14058453570107288	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	186	0.13762486126526083	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGC	155	0.11468738438771735	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	155	0.11468738438771735	No Hit
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	144	0.10654827968923418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	40	6.7393557E-9	45.0	5
ATGGGAC	20	7.01119E-4	45.0	5
TTAGGAT	20	7.01119E-4	45.0	5
CAGCGAT	20	7.01119E-4	45.0	21
GTACCTG	40	6.7393557E-9	45.0	9
GGTACCT	40	6.7393557E-9	45.0	8
CGGTTTA	50	2.1827873E-11	45.0	1
ATAGCGG	20	7.01119E-4	45.0	2
AATGGGC	25	3.8724997E-5	45.0	4
TGCGGGC	25	3.8724997E-5	45.0	4
ACGGGGT	20	7.01119E-4	45.0	5
TAGCATA	40	6.7393557E-9	45.0	30
AATGCGG	20	7.01119E-4	45.0	2
AGACGAG	20	7.01119E-4	45.0	1
TCCAGCA	20	7.01119E-4	45.0	16
TTAAGGC	20	7.01119E-4	45.0	27
CGGGATA	20	7.01119E-4	45.0	6
CAGTGCG	20	7.01119E-4	45.0	1
CGGGAAT	20	7.01119E-4	45.0	6
TATAAGC	20	7.01119E-4	45.0	44