SRR3549442_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549442_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128902
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2380	1.8463639043614528	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	959	0.7439760438162325	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG	806	0.6252812213929962	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC	698	0.5414966408589471	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC	510	0.3956494080774542	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	326	0.2529053079083335	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	325	0.2521295247552404	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	302	0.23428651223410032	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	269	0.20868566818202974	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	256	0.19860048719182014	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	225	0.17455120944593566	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	195	0.15127771485314426	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT	163	0.12645265395416674	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	163	0.12645265395416674	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTC	146	0.11326434035158492	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	138	0.10705807512684054	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	136	0.10550650882065445	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	135	0.1047307256675614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAATC	25	3.8714956E-5	45.000004	11
ATGGGCG	50	2.1827873E-11	45.000004	5
CTGTCTA	20	7.009974E-4	45.000004	1
CACGGGC	20	7.009974E-4	45.000004	4
CAACGCA	20	7.009974E-4	45.000004	17
TTAGCGG	20	7.009974E-4	45.000004	2
ACGCAAG	20	7.009974E-4	45.000004	19
GGGTCCA	25	3.8714956E-5	45.000004	7
ATGGATT	20	7.009974E-4	45.000004	16
TTAGATG	20	7.009974E-4	45.000004	1
CGGTTTA	100	0.0	45.000004	1
TATGGCC	20	7.009974E-4	45.000004	10
CTGAGAG	20	7.009974E-4	45.000004	19
AACCAGA	20	7.009974E-4	45.000004	10
ATAGCCC	20	7.009974E-4	45.000004	31
GTTAGCG	20	7.009974E-4	45.000004	1
GGATATC	20	7.009974E-4	45.000004	8
CACGAGA	20	7.009974E-4	45.000004	14
CCTCGTC	30	2.1504802E-6	45.000004	36
ACTTACT	20	7.009974E-4	45.000004	38