##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549442_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 128902 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39876805635289 31.0 31.0 34.0 30.0 34.0 2 31.429279607764038 31.0 31.0 34.0 30.0 34.0 3 30.575848318877906 31.0 31.0 34.0 26.0 34.0 4 35.0413104529022 37.0 35.0 37.0 32.0 37.0 5 35.09138725543436 35.0 35.0 37.0 32.0 37.0 6 35.18789467967913 36.0 35.0 37.0 32.0 37.0 7 32.09463002901429 36.0 35.0 37.0 16.0 37.0 8 33.63048672635025 37.0 35.0 37.0 19.0 37.0 9 36.70086577399885 39.0 35.0 39.0 32.0 39.0 10 36.62932305162061 38.0 35.0 39.0 32.0 39.0 11 36.51349086903229 38.0 35.0 39.0 32.0 39.0 12 36.16587795379436 37.0 35.0 39.0 32.0 39.0 13 32.28938263176677 37.0 33.0 39.0 8.0 39.0 14 34.70386029696979 38.0 33.0 40.0 17.0 41.0 15 36.185218227800966 38.0 34.0 40.0 29.0 41.0 16 36.91571116041644 38.0 35.0 40.0 32.0 41.0 17 37.071224651285476 38.0 35.0 40.0 32.0 41.0 18 36.975873143938806 38.0 35.0 40.0 32.0 41.0 19 36.850134210485486 38.0 35.0 40.0 32.0 41.0 20 36.6312780251664 38.0 35.0 40.0 32.0 41.0 21 36.559634450978265 38.0 35.0 40.0 32.0 41.0 22 36.56402538362477 38.0 35.0 40.0 32.0 41.0 23 36.47614466804239 38.0 35.0 40.0 32.0 41.0 24 36.27324634218243 37.0 35.0 40.0 31.0 41.0 25 36.11957921521776 37.0 35.0 40.0 31.0 41.0 26 35.94314285270981 37.0 35.0 40.0 31.0 41.0 27 35.92092442320523 37.0 34.0 40.0 31.0 41.0 28 35.883818714992785 37.0 34.0 40.0 31.0 41.0 29 35.85015748398008 37.0 35.0 40.0 31.0 41.0 30 35.654279995655614 36.0 34.0 40.0 30.0 41.0 31 35.418247971327055 36.0 34.0 40.0 30.0 41.0 32 35.07485531644195 36.0 34.0 40.0 27.0 41.0 33 34.70950024049278 36.0 34.0 40.0 25.0 41.0 34 34.35402088408248 36.0 34.0 40.0 23.0 41.0 35 34.05466943879847 36.0 33.0 40.0 21.0 41.0 36 33.67751470109075 36.0 33.0 40.0 19.0 41.0 37 33.4909466106034 36.0 33.0 40.0 18.0 41.0 38 33.37755814494732 36.0 33.0 40.0 18.0 41.0 39 33.274262618112985 36.0 33.0 40.0 17.0 41.0 40 33.14086670493864 36.0 33.0 40.0 16.0 41.0 41 33.094304200089994 36.0 33.0 40.0 15.0 41.0 42 33.03909171308436 36.0 32.0 40.0 15.0 41.0 43 32.942312764736 35.0 32.0 40.0 15.0 41.0 44 32.69531116662271 35.0 32.0 40.0 15.0 41.0 45 32.65386883058447 35.0 32.0 40.0 15.0 41.0 46 32.580658174427086 35.0 31.0 40.0 14.0 41.0 47 32.37028905680284 35.0 31.0 40.0 13.0 41.0 48 32.29312190656468 35.0 31.0 39.0 12.0 41.0 49 32.286923399171464 35.0 31.0 39.0 12.0 41.0 50 32.05248948813828 35.0 31.0 39.0 10.0 41.0 51 30.32783044483406 34.0 27.0 38.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 6.0 10 2.0 11 5.0 12 0.0 13 3.0 14 6.0 15 7.0 16 12.0 17 51.0 18 86.0 19 172.0 20 319.0 21 478.0 22 859.0 23 1318.0 24 1907.0 25 2699.0 26 3276.0 27 3382.0 28 3275.0 29 3344.0 30 3872.0 31 4823.0 32 6075.0 33 8893.0 34 12676.0 35 14675.0 36 11691.0 37 15346.0 38 16900.0 39 12740.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.72022156366852 22.691657227971636 24.835146079967725 20.752975128392112 2 34.769825138477295 28.042233634854384 25.338629346325114 11.849311880343206 3 28.89714666956292 26.932863725931327 32.42152953406464 11.74846007044111 4 23.76844424446479 25.448014770911236 38.56728367286776 12.216257311756218 5 22.76070192859692 29.641122713379158 34.18643620735132 13.411739150672606 6 18.689391941164608 39.29729561992832 32.88777520907356 9.125537229833517 7 65.77322306868784 15.245690524584568 16.688647189337637 2.2924392173899553 8 71.45195574932895 8.78031372670711 16.54279995655614 3.224930567407798 9 67.3178073264961 8.591022637352408 17.922918185908678 6.16825185024282 10 41.2631301298661 24.64585499061302 24.1353896758778 9.955625203643077 11 35.62706552264511 22.165676250174553 29.44795270825899 12.759305518921352 12 31.983987835720157 22.164900467021457 32.7939054475493 13.05720624970908 13 17.39228250919303 39.70225442584289 31.1872585374936 11.718204527470482 14 13.605684938945867 38.15301546911608 33.693038121984145 14.54826146995392 15 12.763960217839909 25.541884532435493 49.63770926750555 12.05644598221905 16 13.846177716404712 23.41546290980745 45.84102651626817 16.897332857519668 17 13.210811314021504 23.261857845495026 36.87685218227801 26.650478658205458 18 17.3953856418054 26.565142511365224 38.88768211509519 17.151789731734183 19 23.02369241749546 25.8312516485392 33.96844114133217 17.176614792633163 20 24.104358349754076 25.75444911638299 35.171680811779495 14.969511722083443 21 17.784828784658114 29.523203674109013 35.854369986501375 16.837597554731502 22 16.958619726614018 26.3331833485904 33.74346402693519 22.96473289786039 23 15.957083675970893 30.012722843710726 34.46416657615863 19.56602690415975 24 16.528060076647375 25.351817659927693 41.30424663698003 16.815875626444896 25 14.407068936090983 28.281950629160136 38.90164621185087 18.409334222898018 26 13.154179143845713 33.262478472017506 34.96687405936293 18.616468324773862 27 15.442739445470202 33.48202510434283 35.13289165412484 15.942343796062126 28 12.033948270779351 29.742750306434345 42.06218677755194 16.161114645234363 29 14.872538827946812 27.378163255806736 39.74957719818156 17.99972071806489 30 15.159578594591238 32.110440489674325 36.46568711113869 16.264293804595738 31 23.017486152270717 28.870770042357762 31.743495058261317 16.368248747110208 32 24.07255124047726 30.093404291632403 31.44171541170812 14.392329056182215 33 20.8546027214473 29.860669345704487 30.849792865898124 18.434935066950086 34 16.851561651487177 29.493723914291476 32.93820111402461 20.71651332019674 35 19.114521109059595 28.38590557167461 32.37498254487905 20.124590774386743 36 22.96473289786039 29.676808738421435 31.39827155513491 15.960186808583266 37 18.112985058416474 32.25706350560891 33.42073823524848 16.209213200726133 38 18.707234953685745 32.07708181409132 29.703961148779694 19.511722083443235 39 20.730477416952414 28.95145149027944 31.245442273975577 19.072628818792573 40 22.413151076011236 26.544972149384805 31.43473336333028 19.607143411273682 41 16.370576096569486 28.175668337186387 31.01425889435385 24.439496671890275 42 19.961676312237202 27.013545173853004 31.26173372019053 21.76304479371926 43 21.20370514033917 27.30523963941599 30.402165986563435 21.088889233681403 44 17.95472529518549 30.164776341716966 31.710912165831406 20.16958619726614 45 16.737521527982498 33.541760407131 28.72569859272936 20.995019472157143 46 20.79098850289367 32.38739507532855 28.612434252377778 18.20918216940001 47 17.915160354377743 28.088780624039966 33.45409691083148 20.541962110750802 48 20.02994522970939 26.977859148810722 33.52857209352842 19.46362352795147 49 18.70335603792028 25.888659601868085 34.83886983910258 20.56911452110906 50 17.258847806861027 29.16013715846147 32.428511582442475 21.15250345223503 51 17.07964189849653 29.699306449861133 29.551907650773458 23.669144000868876 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 388.0 1 395.0 2 402.0 3 2166.5 4 3931.0 5 3403.5 6 2876.0 7 2228.5 8 1581.0 9 1591.0 10 1601.0 11 1544.5 12 1488.0 13 1469.0 14 1450.0 15 1369.5 16 1289.0 17 1198.0 18 1107.0 19 1144.5 20 1182.0 21 1141.5 22 1101.0 23 1124.5 24 1148.0 25 1428.5 26 1914.0 27 2119.0 28 2355.0 29 2591.0 30 2842.0 31 3093.0 32 3122.0 33 3151.0 34 3432.5 35 3714.0 36 3845.0 37 3976.0 38 4780.0 39 5584.0 40 7089.0 41 8594.0 42 10065.0 43 11536.0 44 12015.5 45 12495.0 46 13407.0 47 14319.0 48 12529.0 49 10739.0 50 9690.5 51 8642.0 52 7247.5 53 5853.0 54 4873.0 55 3893.0 56 3220.5 57 2548.0 58 2181.0 59 1814.0 60 1539.0 61 1264.0 62 1016.5 63 769.0 64 585.0 65 401.0 66 294.5 67 188.0 68 161.5 69 135.0 70 114.0 71 93.0 72 71.5 73 50.0 74 45.5 75 32.5 76 24.0 77 19.0 78 14.0 79 10.0 80 6.0 81 3.0 82 0.0 83 0.0 84 0.0 85 0.5 86 1.0 87 1.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 128902.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.27697010131728 #Duplication Level Percentage of deduplicated Percentage of total 1 79.29123569325714 39.072318505531335 2 8.36285206001354 8.241920218460535 3 3.362773343409059 4.971218445020248 4 1.8388198806656275 3.6244588912507174 5 1.2075127127316236 2.975128392111837 6 0.8595853209275965 2.5414656095328234 7 0.6407531604716699 2.210206203162092 8 0.632881500023615 2.4949186203472404 9 0.5289755821092901 2.3459682549533754 >10 3.219509123254459 24.230035220555152 >50 0.022040649254553756 0.7051868861615801 >100 0.02518931343377572 2.434407534405983 >500 0.00629732835844393 2.30640331414563 >1k 0.0015743320896109826 1.8463639043614528 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2380 1.8463639043614528 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 959 0.7439760438162325 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG 806 0.6252812213929962 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC 698 0.5414966408589471 No Hit GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC 510 0.3956494080774542 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 326 0.2529053079083335 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 325 0.2521295247552404 No Hit CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 302 0.23428651223410032 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 269 0.20868566818202974 No Hit CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 256 0.19860048719182014 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 225 0.17455120944593566 No Hit GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC 195 0.15127771485314426 No Hit GAATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT 163 0.12645265395416674 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 163 0.12645265395416674 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTC 146 0.11326434035158492 No Hit GAACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT 138 0.10705807512684054 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 136 0.10550650882065445 No Hit CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC 135 0.1047307256675614 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14507144962839988 0.0 2 0.0 0.0 0.0 0.638469534995578 0.0 3 0.0 0.0 0.0 0.8254332748910025 0.0 4 0.0 0.0 0.0 1.2055670199065958 0.0 5 0.0 0.0 0.0 2.353726086484306 0.0 6 0.0 0.0 0.0 2.7734247723076444 0.0 7 0.0 0.0 0.0 3.2598408092969855 0.0 8 0.0 0.0 0.0 4.11630541031171 0.0 9 0.0 0.0 0.0 4.387053730741183 0.0 10 0.0 0.0 0.0 5.757862562256598 0.0 11 0.0 0.0 0.0 6.622860777955346 0.0 12 0.0 0.0 0.0 8.010736838838808 0.0 13 0.0 0.0 0.0 8.37535492079254 0.0 14 0.0 0.0 0.0 8.527408418798778 0.0 15 0.0 0.0 0.0 8.870304572465905 0.0 16 0.0 0.0 0.0 9.42421374377434 0.0 17 0.0 0.0 0.0 9.993638578144637 0.0 18 0.0 0.0 0.0 10.822950768801105 0.0 19 0.0 0.0 0.0 11.197654031745047 0.0 20 0.0 0.0 0.0 11.58554560829157 0.0 21 0.0 0.0 0.0 12.089028874648958 0.0 22 0.0 0.0 0.0 12.61113093668058 0.0 23 0.0 0.0 0.0 13.14099083024313 0.0 24 0.0 0.0 0.0 13.539743370932957 0.0 25 0.0 0.0 0.0 13.864796512078943 0.0 26 0.0 0.0 0.0 14.191401219531116 0.0 27 0.0 0.0 0.0 14.507144962839988 0.0 28 0.0 0.0 0.0 14.844610634435462 0.0 29 0.0 0.0 0.0 15.178973173418566 0.0 30 0.0 0.0 0.0 15.601774991854278 0.0 31 0.0 0.0 0.0 16.057159702719897 0.0 32 0.0 0.0 0.0 16.45048176133807 0.0 33 0.0 0.0 0.0 16.838373337884594 0.0 34 0.0 0.0 0.0 17.224713348124933 0.0 35 0.0 0.0 0.0 17.718111433492112 0.0 36 0.0 0.0 0.0 18.202975904175265 0.0 37 0.0 0.0 0.0 18.6451723014383 0.0 38 0.0 0.0 0.0 19.04159749266885 0.0 39 0.0 0.0 0.0 19.478363407860236 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAATC 25 3.8714956E-5 45.000004 11 ATGGGCG 50 2.1827873E-11 45.000004 5 CTGTCTA 20 7.009974E-4 45.000004 1 CACGGGC 20 7.009974E-4 45.000004 4 CAACGCA 20 7.009974E-4 45.000004 17 TTAGCGG 20 7.009974E-4 45.000004 2 ACGCAAG 20 7.009974E-4 45.000004 19 GGGTCCA 25 3.8714956E-5 45.000004 7 ATGGATT 20 7.009974E-4 45.000004 16 TTAGATG 20 7.009974E-4 45.000004 1 CGGTTTA 100 0.0 45.000004 1 TATGGCC 20 7.009974E-4 45.000004 10 CTGAGAG 20 7.009974E-4 45.000004 19 AACCAGA 20 7.009974E-4 45.000004 10 ATAGCCC 20 7.009974E-4 45.000004 31 GTTAGCG 20 7.009974E-4 45.000004 1 GGATATC 20 7.009974E-4 45.000004 8 CACGAGA 20 7.009974E-4 45.000004 14 CCTCGTC 30 2.1504802E-6 45.000004 36 ACTTACT 20 7.009974E-4 45.000004 38 >>END_MODULE