SRR3549439_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549439_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444180
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4135	0.9309289026971047	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1576	0.35481111261200415	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	815	0.18348417308298437	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	799	0.1798820298077356	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	751	0.1690755999819893	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	610	0.13733171236885947	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	536	0.12067179972083389	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	480	0.10806429825746318	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	469	0.10558782475572966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGCA	20	7.028606E-4	45.000004	7
GCCTCCG	20	7.028606E-4	45.000004	44
CACAACG	20	7.028606E-4	45.000004	12
GCGTAAG	20	7.028606E-4	45.000004	1
CCCGATG	20	7.028606E-4	45.000004	28
CGACGGT	85	0.0	45.0	28
GTCTCGC	25	3.886928E-5	45.0	31
TGTATCG	25	3.886928E-5	45.0	4
TTCGTAG	35	1.2096825E-7	45.0	1
AGTATAC	25	3.886928E-5	45.0	15
TATTGCG	25	3.886928E-5	45.0	1
GGGACGT	75	0.0	45.0	7
CCATCGA	25	3.886928E-5	45.0	31
CTAGTCT	25	3.886928E-5	45.0	28
TCTCGCG	25	3.886928E-5	45.0	32
TCGTCCC	25	3.886928E-5	45.0	38
CGGGACG	25	3.886928E-5	45.0	6
TATCGCC	25	3.886928E-5	45.0	6
ATCGCCA	25	3.886928E-5	45.0	7
TCGCGCA	25	3.886928E-5	45.0	34