SRR3549436_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549436_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	289863
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1377	0.47505200732759956	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	570	0.1966446217695946	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	556	0.19181475386648175	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	402	0.1386862069322404	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	387	0.13351134846461948	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	338	0.11660681080372451	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	319	0.11005199007807136	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	25	3.883565E-5	45.0	28
CTAGACG	20	7.0245506E-4	45.0	1
CGAACGG	35	1.207718E-7	45.0	2
CGACGGT	25	3.883565E-5	45.0	28
GGGTCCG	25	3.883565E-5	45.0	7
CGGTTTA	55	1.8189894E-12	45.0	1
GACCGTG	20	7.0245506E-4	45.0	12
CGGCAGG	20	7.0245506E-4	45.0	2
TTGTCGC	25	3.883565E-5	45.0	38
CACGACG	25	3.883565E-5	45.0	26
ACGGGTG	20	7.0245506E-4	45.0	5
ACGGGTA	20	7.0245506E-4	45.0	5
TCGGCAG	20	7.0245506E-4	45.0	1
ATCGTGA	25	3.883565E-5	45.0	30
GTTGTCG	25	3.883565E-5	45.0	37
CTAGTAG	20	7.0245506E-4	45.0	1
GCGGGTA	35	1.207718E-7	45.0	5
ACGTGCA	25	3.883565E-5	45.0	27
CGGGCAT	25	3.883565E-5	45.0	6
GTCCCGA	20	7.0245506E-4	45.0	38