SRR3549432_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549432_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	165348
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2047	1.2379950165711107	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	850	0.5140673004814089	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	802	0.48503761763069403	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	752	0.45479836466119944	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	638	0.3858528678907516	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	285	0.17236374192611947	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	283	0.1711541718073397	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	279	0.1687350315697801	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	262	0.1584536855601519	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	241	0.14575319931296415	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	236	0.1427292740160147	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	228	0.13789099354089557	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	227	0.1372862084815057	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC	226	0.13668142342211578	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	199	0.12035222681858868	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	185	0.11188523598713017	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGCG	25	3.876278E-5	45.000004	36
GCAAGAT	25	3.876278E-5	45.000004	37
CTCGTAC	25	3.876278E-5	45.000004	29
GAATGAC	25	3.876278E-5	45.000004	1
GTCTCGT	25	3.876278E-5	45.000004	27
CACGCGG	25	3.876278E-5	45.000004	37
CGGGGTT	25	3.876278E-5	45.000004	6
AGGCCGG	25	3.876278E-5	45.000004	2
TGTCTCG	25	3.876278E-5	45.000004	26
GTACTGG	25	3.876278E-5	45.000004	2
AGATTAG	25	3.876278E-5	45.000004	1
CGGGACT	25	3.876278E-5	45.000004	6
GGCATAA	25	3.876278E-5	45.000004	8
ATTGCGG	25	3.876278E-5	45.000004	2
TTACACG	25	3.876278E-5	45.000004	34
AGTACGG	25	3.876278E-5	45.000004	2
TCCGGGG	25	3.876278E-5	45.000004	4
GTTGATT	20	7.015752E-4	45.0	29
CGTGGCG	20	7.015752E-4	45.0	27
CCGGGTG	20	7.015752E-4	45.0	5