SRR3549428_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549428_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	154647
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2779	1.7969957386822895	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1092	0.7061242701119324	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	325	0.21015603277140843	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCG	285	0.18429067489185047	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	271	0.17523779963400518	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	271	0.17523779963400518	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	256	0.16553829042917095	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGC	253	0.1635983885882041	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	224	0.1448460041255246	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	215	0.13902629860262405	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	189	0.12221381598091137	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	177	0.11445420861704399	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	165	0.10669460125317658	No Hit
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	161	0.10410806546522079	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	35	1.202825E-7	45.0	5
TCGCAGG	25	3.875107E-5	45.0	2
TTAATCG	20	7.0143363E-4	45.0	20
CTCAACC	20	7.0143363E-4	45.0	36
TATGGGT	40	6.7502697E-9	45.0	4
AGCCATA	20	7.0143363E-4	45.0	45
CGTTGAG	25	3.875107E-5	45.0	25
GGGTACT	20	7.0143363E-4	45.0	7
GGGTACC	25	3.875107E-5	45.0	7
TACGGTT	25	3.875107E-5	45.0	33
TGCGGGC	40	6.7502697E-9	45.0	4
TCGATGG	20	7.0143363E-4	45.0	2
GACTTAT	20	7.0143363E-4	45.0	9
GAAAGGC	20	7.0143363E-4	45.0	4
CTACGAA	20	7.0143363E-4	45.0	11
GGTATGC	25	3.875107E-5	45.0	8
GAACGTT	25	3.875107E-5	45.0	22
CGAATAT	20	7.0143363E-4	45.0	14
GCGATGG	45	3.8016879E-10	45.0	9
CGTACGG	25	3.875107E-5	45.0	31