SRR3549423_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549423_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	406437
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4914	1.2090434679913493	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG	2154	0.5299714346872947	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC	2041	0.5021688478165128	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2028	0.49897032012341397	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC	1875	0.4613261095815588	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	756	0.1860066873832845	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	699	0.1719823736520051	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT	679	0.1670615618164685	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC	654	0.16091054702204768	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT	599	0.14737831447432198	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	556	0.13679856902791823	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	497	0.12228217411308517	Illumina Single End Adapter 2 (95% over 21bp)
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	484	0.11908364641998637	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACCT	65	0.0	45.000004	11
CCGGCGC	30	2.1620253E-6	45.000004	21
TCGATTG	20	7.027898E-4	45.000004	1
TACGGCA	30	2.1620253E-6	45.000004	7
CGACAAT	30	2.1620253E-6	45.000004	20
ACGGGCG	20	7.027898E-4	45.000004	5
GCGATGC	30	2.1620253E-6	45.000004	9
CTACCGG	20	7.027898E-4	45.000004	2
TCGAAAG	20	7.027898E-4	45.000004	1
TGCGTAG	40	6.7957444E-9	45.000004	1
CGTGGGC	35	1.2093369E-7	45.0	4
TCGCATG	35	1.2093369E-7	45.0	1
ACCGGCG	25	3.8863407E-5	45.0	20
GCGCGAC	25	3.8863407E-5	45.0	9
CGCGACC	25	3.8863407E-5	45.0	10
CTCGGGC	25	3.8863407E-5	45.0	4
TAGGCGA	25	3.8863407E-5	45.0	6
TGCACGG	25	3.8863407E-5	45.0	2
CGCTTGG	25	3.8863407E-5	45.0	2
GTTGCGG	25	3.8863407E-5	45.0	2