SRR3549417_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549417_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	373442
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3502	0.9377627583399831	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	1728	0.46272245757038577	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1697	0.454421302370917	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1481	0.39658099517461876	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC	1209	0.32374505277928034	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT	549	0.14701078079059132	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTC	465	0.1245173279920309	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCT	424	0.11353838079273355	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	424	0.11353838079273355	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	396	0.1060405631932134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGCGG	35	1.2089913E-7	45.000004	2
TGTAGCG	30	2.1615506E-6	45.000004	1
ACGTAGG	35	1.2089913E-7	45.000004	2
CACGGGC	20	7.0271624E-4	45.0	4
ATTCGGA	25	3.8857303E-5	45.0	33
CGGGCTT	25	3.8857303E-5	45.0	6
GCGGGCC	20	7.0271624E-4	45.0	5
CTCGAGG	20	7.0271624E-4	45.0	2
TGGGACG	25	3.8857303E-5	45.0	6
CGGTTTA	230	0.0	44.999996	1
CGGTTTT	740	0.0	44.087837	1
CGTTTTT	2005	0.0	42.41895	1
CTCGTCC	125	0.0	41.399998	37
TCCTCGT	125	0.0	41.399998	35
CTCCTCG	125	0.0	41.399998	34
CACGGGA	60	3.6379788E-12	41.250004	4
TCGATGG	55	6.002665E-11	40.909092	2
TACGGCT	155	0.0	40.64516	7
AGCGGGC	45	1.922308E-8	40.0	4
AGGGACG	45	1.922308E-8	40.0	6