SRR3549409_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549409_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	87548
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1346	1.5374423173573353	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	491	0.5608351989765614	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	279	0.318682322840042	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGC	254	0.29012655914469776	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	238	0.2718508703796774	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG	235	0.2684241787362361	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	213	0.24329510668433316	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	170	0.19417919312834103	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC	166	0.18961027093708593	TruSeq Adapter, Index 22 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	162	0.18504134874583084	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	135	0.15420112395485905	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	130	0.1484899712157902	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	99	0.1130808242335633	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	97	0.11079636313793577	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	94	0.10736967149449445	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	92	0.10508521039886691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGGCA	20	6.9975737E-4	45.000004	5
GGCACCG	20	6.9975737E-4	45.000004	8
TATACGG	20	6.9975737E-4	45.000004	2
TGACTAT	20	6.9975737E-4	45.000004	23
TGGTAAG	20	6.9975737E-4	45.000004	11
GGGTATA	20	6.9975737E-4	45.000004	7
ATGACGG	20	6.9975737E-4	45.000004	2
CTGGGCT	20	6.9975737E-4	45.000004	5
GGACCGA	30	2.1425094E-6	45.000004	8
GACGGGA	30	2.1425094E-6	45.000004	4
ATTGGGA	20	6.9975737E-4	45.000004	4
GGCGATG	40	6.692062E-9	45.000004	8
AGGGCAA	20	6.9975737E-4	45.000004	6
GCTACGA	20	6.9975737E-4	45.000004	10
ATTACGG	20	6.9975737E-4	45.000004	2
CGTGGGA	20	6.9975737E-4	45.000004	4
AAAAGTC	20	6.9975737E-4	45.000004	42
AGCGGTT	20	6.9975737E-4	45.000004	28
GTGGGAC	20	6.9975737E-4	45.000004	5
GACCGAT	30	2.1425094E-6	45.000004	9