SRR3549404_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549404_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	320124
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2894	0.9040246904324574	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1144	0.3573615224100661	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	704	0.21991478302157913	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	694	0.21679099349002262	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	679	0.21210530919268783	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	614	0.19180067723757044	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	573	0.17899314015818868	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC	554	0.1730579400482313	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	458	0.14306956054528872	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	448	0.13994577101373218	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	430	0.13432294985693044	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	363	0.11339355999550176	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	357	0.11151928627656782	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	321	0.10027364396296436	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	30	2.1605774E-6	45.000004	6
GGCCGAT	30	2.1605774E-6	45.000004	8
ACGGGAT	65	0.0	45.000004	5
GAGGGCC	30	2.1605774E-6	45.000004	5
ATATGCG	20	7.0256524E-4	45.0	1
ACGGGTA	25	3.8844788E-5	45.0	5
GCATTCG	20	7.0256524E-4	45.0	29
CCCCGCT	20	7.0256524E-4	45.0	34
CCTCCGC	25	3.8844788E-5	45.0	45
GCGGGTA	35	1.2082637E-7	45.0	5
CGGGATC	40	6.7884685E-9	45.0	6
CGGGAAC	20	7.0256524E-4	45.0	6
AATTCGT	25	3.8844788E-5	45.0	31
TCGTACA	25	3.8844788E-5	45.0	34
TCGTAAG	20	7.0256524E-4	45.0	1
GCGGCTA	75	0.0	45.0	24
TTACGTG	20	7.0256524E-4	45.0	23
ACGTAGG	20	7.0256524E-4	45.0	2
CGGTAGA	20	7.0256524E-4	45.0	19
AGGGCCG	20	7.0256524E-4	45.0	6