SRR3549402_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549402_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	210907
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2450	1.161649447386763	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	2068	0.9805269621207452	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	2037	0.9658285405415656	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	1841	0.8728965847506247	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1042	0.494056622113064	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	694	0.32905498632098507	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	507	0.24039031421432197	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	497	0.2356488878984576	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTC	465	0.2204763236876917	No Hit
GAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	462	0.2190538957929324	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	365	0.17306206052904835	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	307	0.14556178789703517	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	288	0.13655307789689294	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTA	269	0.1275443678967507	No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	253	0.11995808579136776	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	239	0.11332008894915768	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	227	0.10763037737012048	No Hit
GAATCTATCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	222	0.10525966421218831	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGAC	50	2.1827873E-11	45.0	5
AAATAGG	35	1.2056262E-7	45.0	2
GGTCAAG	20	7.0201774E-4	45.0	8
CTGCGGG	25	3.8799437E-5	45.0	3
CAGGGCA	20	7.0201774E-4	45.0	5
AATGCGG	20	7.0201774E-4	45.0	2
AATTGAC	20	7.0201774E-4	45.0	14
TACGAGG	25	3.8799437E-5	45.0	2
TACCTGA	35	1.2056262E-7	45.0	7
GGCGGGC	20	7.0201774E-4	45.0	4
GGCATGA	35	1.2056262E-7	45.0	8
TAGGCGG	25	3.8799437E-5	45.0	2
CCACGTG	25	3.8799437E-5	45.0	45
TGTACAC	20	7.0201774E-4	45.0	17
AGTACGG	20	7.0201774E-4	45.0	2
TTGGGAC	80	0.0	45.0	5
GGCACCG	65	0.0	44.999996	8
GGCCGAT	30	2.1570486E-6	44.999996	8
CAGGGTC	30	2.1570486E-6	44.999996	5
ACAGGGT	30	2.1570486E-6	44.999996	4