SRR3549397_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549397_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1141572
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20430	1.7896374473094996	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	4239	0.3713300606532045	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	3130	0.2741833191423756	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC	2826	0.24755337376880301	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2327	0.2038417200141559	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2241	0.1963082486255795	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1833	0.16056805878210048	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	20	7.033265E-4	45.000004	6
AGCGTAT	30	2.1654887E-6	45.000004	44
GCGAACG	20	7.033265E-4	45.000004	1
CGGCCCT	35	1.2119199E-7	45.000004	37
TCGGGTG	20	7.033265E-4	45.000004	5
GGTCCAC	20	7.033265E-4	45.000004	42
CGCTAGC	20	7.033265E-4	45.000004	26
GGACGTA	35	1.2119199E-7	45.000004	8
GTTCCGT	30	2.1654887E-6	45.000004	19
TCATCGG	20	7.033265E-4	45.000004	42
CGCAATC	20	7.033265E-4	45.000004	20
ATCGGAT	20	7.033265E-4	45.000004	44
TTCGCGG	60	0.0	45.000004	2
CATCACG	35	1.2119199E-7	45.000004	14
GCGTAGT	20	7.033265E-4	45.000004	3
GCGTAAG	70	0.0	45.000004	1
GTCGGAA	20	7.033265E-4	45.000004	13
TACCGGG	80	0.0	45.000004	3
CGTAATC	25	3.8907896E-5	45.0	19
CGTAAGT	25	3.8907896E-5	45.0	16