SRR3549396_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549396_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1199030
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15574	1.2988832639717105	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	3055	0.2547892880078063	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2516	0.20983628432983328	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2419	0.20174641168277693	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	2336	0.1948241495208627	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2039	0.1700541270860612	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2038	0.1699707263371225	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC	1819	0.15170596231954164	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	65	0.0	45.000004	1
GCCCCTA	20	7.033409E-4	45.0	11
CGAACTA	25	3.8909064E-5	45.0	13
TCGCACG	20	7.033409E-4	45.0	30
GATCGTA	35	1.2119926E-7	45.0	9
CGACGGT	35	1.2119926E-7	45.0	28
CTATCGC	25	3.8909064E-5	45.0	37
GCTATCG	25	3.8909064E-5	45.0	36
TAAACCG	20	7.033409E-4	45.0	41
ATTCGCT	20	7.033409E-4	45.0	21
GTTAGCG	20	7.033409E-4	45.0	1
CGCGATA	20	7.033409E-4	45.0	33
CGCGAGG	35	1.2119926E-7	45.0	2
TGACGGA	25	3.8909064E-5	45.0	3
TCGATCT	20	7.033409E-4	45.0	37
CGCCTCG	25	3.8909064E-5	45.0	41
GTTCGAC	20	7.033409E-4	45.0	16
CTGTTCG	45	3.8562575E-10	45.0	43
ACCGTCG	20	7.033409E-4	45.0	35
CCGCGAT	20	7.033409E-4	45.0	32