SRR3549394_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549394_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	809060
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8381	1.035893506044051	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2066	0.25535806985884857	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1876	0.23187402664820905	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1722	0.21283959162484858	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	1519	0.18774874545769163	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1458	0.18020913158480212	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	1390	0.17180431611994168	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC	940	0.11618421377895334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGT	20	7.032046E-4	45.000004	43
GTCGACA	30	2.164701E-6	45.000004	43
GCGAACG	20	7.032046E-4	45.000004	1
ATTACCG	20	7.032046E-4	45.000004	24
CGTTCGA	30	2.164701E-6	45.000004	38
TATTGCG	40	6.8102963E-9	45.000004	1
CTAACCG	20	7.032046E-4	45.000004	26
CCGTACA	20	7.032046E-4	45.000004	30
TGACCGA	20	7.032046E-4	45.000004	34
GCGATAT	20	7.032046E-4	45.000004	9
GCGGCTA	20	7.032046E-4	45.000004	24
CGAGACT	20	7.032046E-4	45.000004	12
AACTCGA	20	7.032046E-4	45.000004	38
ACGTAAC	20	7.032046E-4	45.000004	10
CAATCGT	20	7.032046E-4	45.000004	41
CTAGGCG	20	7.032046E-4	45.000004	1
GCGTATG	65	0.0	45.000004	1
CCGTTCG	30	2.164701E-6	45.000004	37
TCGCGGG	40	6.8102963E-9	45.000004	3
TACGTGT	20	7.032046E-4	45.000004	23