SRR3549392_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549392_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	740489
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1747	0.23592517917214165	No Hit
AAGGAAAGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1577	0.21296737696306092	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1523	0.20567489861429405	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1331	0.17974608670756756	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	1224	0.16529617590538145	No Hit
GAATCTATCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	1039	0.14031268526608767	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	784	0.10587598195246654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.0316583E-4	45.000004	36
AGCGTAA	30	2.1644519E-6	45.000004	1
AACCGCG	30	2.1644519E-6	45.000004	25
CGTATAG	60	0.0	45.000004	2
CTGTACG	30	2.1644519E-6	45.000004	25
CGACGAA	20	7.0316583E-4	45.000004	17
GGGTCGA	20	7.0316583E-4	45.000004	11
GCGCGAG	20	7.0316583E-4	45.000004	2
ACCGCGT	30	2.1644519E-6	45.000004	26
ATTACGC	30	2.1644519E-6	45.000004	29
CGCGAAG	20	7.0316583E-4	45.000004	2
CTCGCTA	20	7.0316583E-4	45.000004	1
TCGTATA	30	2.1644519E-6	45.000004	1
CCGAATA	40	6.8102963E-9	45.000004	1
ATTGCGG	20	7.0316583E-4	45.000004	2
TATACGC	20	7.0316583E-4	45.000004	13
TAAGCGC	30	2.1644519E-6	45.000004	19
ACCCCGA	30	2.1644519E-6	45.000004	24
TATCGTC	20	7.0316583E-4	45.000004	25
GTGCGAA	20	7.0316583E-4	45.000004	1