SRR3549390_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549390_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1488271
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17869	1.2006549882380293	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	3306	0.222136962959031	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	2495	0.16764419920834311	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2328	0.15642312455191293	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1954	0.1312932926866142	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1762	0.11839241643491004	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATGCGT	70	0.0	45.000004	16
TATACGG	140	0.0	45.000004	2
CGGGTTG	20	7.033958E-4	45.0	6
CGTGGTA	25	3.891362E-5	45.0	44
CGGGTCT	50	2.1827873E-11	45.0	6
GTCGCGC	20	7.033958E-4	45.0	1
CCGGGTA	20	7.033958E-4	45.0	5
CGTGCGG	95	0.0	45.0	2
CCAATCG	25	3.891362E-5	45.0	24
CCGGACT	40	6.8175723E-9	45.0	45
ACCGACA	25	3.891362E-5	45.0	29
GTCTACG	25	3.891362E-5	45.0	1
CATTCGT	20	7.033958E-4	45.0	16
ATGTCGA	25	3.891362E-5	45.0	24
ACGGGCG	50	2.1827873E-11	45.0	5
TTATACG	40	6.8175723E-9	45.0	1
TGACCGG	25	3.891362E-5	45.0	2
CGTAGTT	20	7.033958E-4	45.0	12
TCGCTCA	20	7.033958E-4	45.0	9
TTGCGCG	25	3.891362E-5	45.0	1