SRR3549388_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549388_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	982186
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9555	0.9728299935042853	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2444	0.2488327058215043	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	1578	0.16066203346413002	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	1342	0.13663399804110424	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1305	0.132866890792579	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1219	0.12411091178249334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGG	35	1.2116834E-7	45.000004	2
GTCTCGC	35	1.2116834E-7	45.000004	31
TCTCGCG	35	1.2116834E-7	45.000004	32
CTCGCGG	35	1.2116834E-7	45.000004	2
ACCCGAT	35	1.2116834E-7	45.000004	32
CGGAATA	25	3.8903898E-5	45.0	9
CGTGGCA	20	7.032784E-4	45.0	37
CTCGTTG	25	3.8903898E-5	45.0	1
GGTCGAA	20	7.032784E-4	45.0	9
CGACGGT	55	1.8189894E-12	45.0	28
CCCTATA	20	7.032784E-4	45.0	43
GCGCGAG	45	3.8380676E-10	45.0	1
CGGTTGG	25	3.8903898E-5	45.0	10
CGTTGAT	20	7.032784E-4	45.0	25
CCTACGG	20	7.032784E-4	45.0	2
CATTCGT	20	7.032784E-4	45.0	16
GCGTTCC	25	3.8903898E-5	45.0	28
ACGGGCG	25	3.8903898E-5	45.0	5
TATTGCG	25	3.8903898E-5	45.0	1
CCCGTCC	20	7.032784E-4	45.0	13