SRR3549387_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549387_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394643
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3060	0.7753843347025032	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1415	0.3585519064065497	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	549	0.13911307181427265	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	507	0.12847054173012062	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	25	3.8861333E-5	45.000004	29
CAACGGG	35	1.2092096E-7	45.000004	3
GACCCGC	35	1.2092096E-7	45.000004	31
GTTACGG	25	3.8861333E-5	45.000004	2
AGCGGGC	35	1.2092096E-7	45.000004	4
GAGACGG	35	1.2092096E-7	45.000004	2
TACGCGG	25	3.8861333E-5	45.000004	2
CTACGGG	35	1.2092096E-7	45.000004	3
CGGGAGA	70	0.0	45.000004	6
GGACGGC	25	3.8861333E-5	45.000004	8
GCTAGCG	25	3.8861333E-5	45.000004	1
GGGCCGA	35	1.2092096E-7	45.000004	7
TATAGCG	50	2.1827873E-11	45.000004	1
ACCCGCA	35	1.2092096E-7	45.000004	32
TCACGAC	45	3.8380676E-10	45.0	25
CTCGTAC	20	7.027651E-4	45.0	29
CGACGGT	40	6.7957444E-9	45.0	28
AGCCAGC	20	7.027651E-4	45.0	36
GTCTCGT	20	7.027651E-4	45.0	27
TTCACGA	20	7.027651E-4	45.0	28