SRR3549385_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549385_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	835200
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14188	1.6987547892720305	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG	2147	0.2570641762452107	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1941	0.2323994252873563	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1587	0.19001436781609196	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1506	0.18031609195402298	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC	1322	0.15828544061302682	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGC	1103	0.13206417624521072	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCC	1047	0.12535919540229884	No Hit
GCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	920	0.11015325670498084	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGCT	860	0.10296934865900384	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGGAC	65	0.0	45.000004	5
TACGGGT	65	0.0	45.000004	4
AGCGTTC	25	3.889887E-5	45.0	21
TATCACG	20	7.0321787E-4	45.0	1
AGCGTCA	25	3.889887E-5	45.0	17
CGGCGAA	20	7.0321787E-4	45.0	31
GTCGCGG	20	7.0321787E-4	45.0	2
GTACCCG	20	7.0321787E-4	45.0	1
GCGACGA	20	7.0321787E-4	45.0	16
TACTTCG	20	7.0321787E-4	45.0	17
GTCGAAG	25	3.889887E-5	45.0	1
GTCTGCG	25	3.889887E-5	45.0	1
ACGCATG	35	1.2113924E-7	45.0	1
CCGATCA	25	3.889887E-5	45.0	11
GGGTCCG	20	7.0321787E-4	45.0	7
CGGCCCT	20	7.0321787E-4	45.0	11
ATGGACG	35	1.2113924E-7	45.0	38
GACCGTA	20	7.0321787E-4	45.0	12
CCGGATG	25	3.889887E-5	45.0	1
CCGTGTA	20	7.0321787E-4	45.0	22