SRR3549384_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549384_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	861835
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10942	1.2696165739381668	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2099	0.24355009949700349	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1756	0.20375129810230497	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1744	0.20235892021094526	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG	1361	0.15791885917838103	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1358	0.15757076470554107	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC	1033	0.11986053014788214	No Hit
TAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	890	0.10326802694251219	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCA	35	1.211447E-7	45.000004	11
CGGCAGG	35	1.211447E-7	45.000004	2
TAGCGCG	45	3.8380676E-10	45.000004	1
GCGGGCG	45	3.8380676E-10	45.000004	5
CGTACAT	45	3.8380676E-10	45.000004	35
AACCGAT	20	7.032303E-4	45.0	23
TCGTTAC	25	3.8899903E-5	45.0	31
CCGGGAC	25	3.8899903E-5	45.0	5
GCACGAA	25	3.8899903E-5	45.0	45
TACGGGT	80	0.0	45.0	4
ATCACGC	20	7.032303E-4	45.0	10
ACGGGCC	20	7.032303E-4	45.0	5
CTCGGTT	20	7.032303E-4	45.0	23
CTAGTCG	20	7.032303E-4	45.0	1
CTACGCC	25	3.8899903E-5	45.0	23
CTACGAT	20	7.032303E-4	45.0	35
ACAGCGT	25	3.8899903E-5	45.0	15
TGTTACG	25	3.8899903E-5	45.0	1
AGCGATG	20	7.032303E-4	45.0	1
GGGCCGT	20	7.032303E-4	45.0	7