SRR3549381_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549381_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	222697
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1818	0.8163558557142665	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	819	0.3677642716336547	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	388	0.17422776238566304	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	340	0.1526738123998078	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	303	0.13605930928571106	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG	231	0.10372838430692825	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGT	35	1.2060264E-7	45.000004	6
CGCGGGA	20	7.021023E-4	45.000004	4
CGACGGT	20	7.021023E-4	45.000004	28
ATAGCGG	20	7.021023E-4	45.000004	2
ACGGGTC	20	7.021023E-4	45.000004	5
GGCCCTC	20	7.021023E-4	45.000004	8
GAGACCG	20	7.021023E-4	45.000004	6
CTACGGG	20	7.021023E-4	45.000004	3
TTGGTCC	20	7.021023E-4	45.000004	16
CGGGACC	20	7.021023E-4	45.000004	6
CGGGAAT	20	7.021023E-4	45.000004	6
GGCGATA	40	6.7720975E-9	45.000004	8
AGGGCGA	70	0.0	45.000004	6
TTCGAAG	20	7.021023E-4	45.000004	2
CCCATAG	35	1.2060264E-7	45.000004	20
TCCGGGA	20	7.021023E-4	45.000004	4
ACGGGTA	25	3.8806447E-5	45.0	5
GACCCGC	45	3.8198777E-10	45.0	31
ACGGGAC	55	1.8189894E-12	45.0	5
TGACCCG	45	3.8198777E-10	45.0	30