SRR3549379_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549379_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	838315
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11283	1.3459141253586062	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCG	2273	0.271139130279191	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2205	0.26302762088236525	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCGTCTTC	1960	0.23380232967321352	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1454	0.1734431568085982	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGC	1181	0.14087783231840062	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1130	0.13479420027078126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTAC	45	3.8380676E-10	45.000004	30
TCGAGAG	45	3.8380676E-10	45.000004	1
TCGCCCT	20	7.0321944E-4	45.0	30
GCCCCGA	25	3.8898987E-5	45.0	1
CGGGTTG	20	7.0321944E-4	45.0	6
CGGAATA	20	7.0321944E-4	45.0	32
CGGGTAT	40	6.8121153E-9	45.0	6
TAATACG	25	3.8898987E-5	45.0	1
TCCGCCA	20	7.0321944E-4	45.0	23
CACGGGC	35	1.2114106E-7	45.0	4
CAACGAG	20	7.0321944E-4	45.0	1
TCCGATT	20	7.0321944E-4	45.0	45
TCCGATA	20	7.0321944E-4	45.0	12
TTTCGGA	20	7.0321944E-4	45.0	29
TTTCGCG	35	1.2114106E-7	45.0	1
CGGCATA	20	7.0321944E-4	45.0	6
GACCGTC	20	7.0321944E-4	45.0	9
CGCATGG	80	0.0	45.0	2
TTATGCG	40	6.8121153E-9	45.0	1
TAGCGGA	40	6.8121153E-9	45.0	3