SRR3549375_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549375_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	237790
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1453	0.6110433575844233	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	689	0.2897514613734808	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	405	0.1703183481222928	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	316	0.132890365448505	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	314	0.13204928718617268	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCGTCTTC	312	0.13120820892384036	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	244	0.10261154800454184	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGT	20	7.0219894E-4	45.000004	44
GTTGAGC	20	7.0219894E-4	45.000004	42
CGGAACA	20	7.0219894E-4	45.000004	15
CCGGGAT	30	2.1582164E-6	45.000004	5
ACACGGG	45	3.8198777E-10	45.000004	3
GATCGTA	20	7.0219894E-4	45.000004	9
CGCGGCC	20	7.0219894E-4	45.000004	35
CGGCCCT	20	7.0219894E-4	45.000004	37
GACGTAC	20	7.0219894E-4	45.000004	9
TAGCGAA	20	7.0219894E-4	45.000004	1
AGGACGC	20	7.0219894E-4	45.000004	7
TATATCG	20	7.0219894E-4	45.000004	29
ACGGGAC	40	6.7757355E-9	45.000004	5
AGAACGC	20	7.0219894E-4	45.000004	10
ATCGTAC	20	7.0219894E-4	45.000004	10
AGGCCGA	20	7.0219894E-4	45.000004	7
GTTCGAA	20	7.0219894E-4	45.000004	1
CGAGGAT	20	7.0219894E-4	45.000004	5
GTGTCAT	20	7.0219894E-4	45.000004	29
CGGGCTG	20	7.0219894E-4	45.000004	6