SRR3549374_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549374_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	565179
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTAAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1518	0.2685874740568917	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1047	0.18525104435939763	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1036	0.18330475831550713	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	835	0.14774080424078034	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	639	0.11306152564054928	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	601	0.10633799203438202	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	20	7.030238E-4	45.000004	32
AGGTACT	40	6.8048394E-9	45.000004	7
GCGACTG	20	7.030238E-4	45.000004	43
CGTTGAT	30	2.163535E-6	45.000004	25
GGCCGAT	30	2.163535E-6	45.000004	8
GCAAACG	20	7.030238E-4	45.000004	10
TACGGAG	30	2.163535E-6	45.000004	40
AGGCGCT	20	7.030238E-4	45.000004	7
TCGGCCC	20	7.030238E-4	45.000004	41
CTGCGAA	20	7.030238E-4	45.000004	1
TACGCTA	20	7.030238E-4	45.000004	1
AAGCCGT	20	7.030238E-4	45.000004	37
TCTACGG	20	7.030238E-4	45.000004	38
GTTCGAA	20	7.030238E-4	45.000004	1
CGCTATC	20	7.030238E-4	45.000004	13
CGTAGCT	20	7.030238E-4	45.000004	15
GAGCGAT	60	0.0	45.000004	6
CGAGGCG	20	7.030238E-4	45.000004	5
CAGGCGA	20	7.030238E-4	45.000004	6
CTCGCAG	20	7.030238E-4	45.000004	2