SRR3549371_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549371_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1062583
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13503	1.2707713185699376	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG	3126	0.2941887833703344	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	2893	0.27226108454586606	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC	2309	0.21730067204161932	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1348	0.1268606781776106	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1242	0.11688498686690829	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAA	40	6.8139343E-9	45.0	12
CGGGTAC	95	0.0	45.0	6
TCGTTAA	20	7.0330466E-4	45.0	25
CGAACCC	25	3.8906066E-5	45.0	34
GCGACCG	20	7.0330466E-4	45.0	1
CGCGGGT	40	6.8139343E-9	45.0	4
CGCATAT	35	1.2118107E-7	45.0	22
CAACCGG	20	7.0330466E-4	45.0	2
CACGCCG	20	7.0330466E-4	45.0	26
CGCGAGG	70	0.0	45.0	2
ATGTCGC	20	7.0330466E-4	45.0	42
TCGATAG	20	7.0330466E-4	45.0	1
AAAGTCG	20	7.0330466E-4	45.0	25
CCGTAGA	25	3.8906066E-5	45.0	38
TACGCGG	35	1.2118107E-7	45.0	2
TCGCTTG	20	7.0330466E-4	45.0	14
TGCGACC	20	7.0330466E-4	45.0	7
CGCTAAG	25	3.8906066E-5	45.0	30
TCTCGAT	25	3.8906066E-5	45.0	35
GATATCG	50	2.1827873E-11	45.0	9