SRR3549367_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549367_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	123041
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2082	1.6921188872002015	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCG	244	0.19830788111279982	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTC	205	0.16661112962345886	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	205	0.16661112962345886	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	199	0.16173470631740638	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	182	0.14791817361692444	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	173	0.14060353865784575	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGC	171	0.13897806422249495	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	139	0.11297047325688186	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	127	0.10321762664477696	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	20	7.008717E-4	45.000004	5
GTGCAGG	40	6.730261E-9	45.000004	2
TCCGCCC	20	7.008717E-4	45.000004	35
CTCGTCC	40	6.730261E-9	45.000004	37
GGGCTCT	20	7.008717E-4	45.000004	7
GTCGAAG	20	7.008717E-4	45.000004	1
TTGTGAG	20	7.008717E-4	45.000004	1
GGATGTC	20	7.008717E-4	45.000004	8
GATCCGG	20	7.008717E-4	45.000004	9
GATTTTC	20	7.008717E-4	45.000004	9
TCCTCGT	40	6.730261E-9	45.000004	35
TTCCGCC	20	7.008717E-4	45.000004	34
CCTCGTC	40	6.730261E-9	45.000004	36
GGATACG	20	7.008717E-4	45.000004	8
CCTCGGG	20	7.008717E-4	45.000004	3
GTCAGGG	20	7.008717E-4	45.000004	3
GTCAGCG	20	7.008717E-4	45.000004	1
AGCGGGT	20	7.008717E-4	45.000004	4
AAACGCG	20	7.008717E-4	45.000004	1
GTCCGGG	20	7.008717E-4	45.000004	3