SRR3549366_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549366_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	129798
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1550	1.1941632382625311	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	227	0.1748871323132868	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	202	0.15562643492195566	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	193	0.14869258386107645	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	190	0.1463813001741167	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	189	0.14561087227846348	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCG	164	0.12635017488713232	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTC	160	0.12326846330451932	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	20	7.0101465E-4	45.000004	5
CGGGTGT	20	7.0101465E-4	45.000004	6
CAGTTGG	20	7.0101465E-4	45.000004	2
GGACTGC	20	7.0101465E-4	45.000004	8
GGACTCA	20	7.0101465E-4	45.000004	8
TACGGGA	80	0.0	45.000004	4
TAACGGG	30	2.1505912E-6	45.000004	3
ACGGGCA	20	7.0101465E-4	45.000004	5
TATTGCG	20	7.0101465E-4	45.000004	1
TACGAAT	40	6.7357178E-9	45.000004	12
CGGGACC	40	6.7357178E-9	45.000004	6
CGGGACA	30	2.1505912E-6	45.000004	6
CGTAAGG	20	7.0101465E-4	45.000004	2
ATACGGG	40	6.7357178E-9	45.000004	3
GTGACGG	20	7.0101465E-4	45.000004	2
AGGGCCG	20	7.0101465E-4	45.000004	6
TGAGCGG	30	2.1505912E-6	45.000004	2
ATGCATA	30	2.1505912E-6	45.000004	26
AGTACGG	20	7.0101465E-4	45.000004	2
CCAGGGA	25	3.871639E-5	45.0	4