##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549366_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 129798 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.9935129971186 33.0 31.0 34.0 30.0 34.0 2 32.26428758532489 33.0 31.0 34.0 30.0 34.0 3 32.025932602967686 33.0 31.0 34.0 30.0 34.0 4 35.8195503782801 37.0 35.0 37.0 35.0 37.0 5 30.88228632182314 37.0 35.0 37.0 0.0 37.0 6 33.315536448943746 37.0 35.0 37.0 17.0 37.0 7 35.4802385244765 37.0 35.0 37.0 32.0 37.0 8 35.844173253825176 37.0 35.0 37.0 35.0 37.0 9 37.803787423535034 39.0 38.0 39.0 35.0 39.0 10 37.482911909274414 39.0 37.0 39.0 34.0 39.0 11 37.5084901154101 39.0 37.0 39.0 35.0 39.0 12 37.3304673415615 39.0 37.0 39.0 34.0 39.0 13 37.24155225812416 39.0 37.0 39.0 34.0 39.0 14 38.596588545278046 40.0 38.0 41.0 34.0 41.0 15 38.65782985870352 40.0 38.0 41.0 34.0 41.0 16 38.685318726020434 40.0 38.0 41.0 35.0 41.0 17 38.575109015547234 40.0 38.0 41.0 34.0 41.0 18 38.42714833818703 40.0 38.0 41.0 34.0 41.0 19 38.336415044915945 40.0 37.0 41.0 34.0 41.0 20 38.208516309958554 40.0 36.0 41.0 34.0 41.0 21 38.14729810936994 40.0 36.0 41.0 34.0 41.0 22 38.19214471717592 40.0 36.0 41.0 34.0 41.0 23 38.20612027920307 40.0 36.0 41.0 34.0 41.0 24 38.20284596064654 40.0 36.0 41.0 34.0 41.0 25 38.13692814989445 40.0 36.0 41.0 34.0 41.0 26 38.07423843202515 40.0 36.0 41.0 34.0 41.0 27 37.567566526448786 40.0 35.0 41.0 33.0 41.0 28 37.61118044962172 40.0 36.0 41.0 33.0 41.0 29 37.73152899120171 40.0 36.0 41.0 33.0 41.0 30 37.62560285982835 40.0 36.0 41.0 33.0 41.0 31 37.52690334211621 40.0 35.0 41.0 33.0 41.0 32 37.326576680688454 40.0 35.0 41.0 33.0 41.0 33 37.109030955792846 40.0 35.0 41.0 32.0 41.0 34 36.879073637498266 40.0 35.0 41.0 31.0 41.0 35 36.66980230820197 40.0 35.0 41.0 30.0 41.0 36 36.53166458651135 40.0 35.0 41.0 30.0 41.0 37 36.45336599947611 40.0 35.0 41.0 30.0 41.0 38 36.38227861754418 40.0 35.0 41.0 30.0 41.0 39 36.27478081326369 40.0 35.0 41.0 30.0 41.0 40 36.139277954976194 40.0 35.0 41.0 29.0 41.0 41 36.049330498158675 39.0 35.0 41.0 28.0 41.0 42 35.976840937456664 39.0 35.0 41.0 27.0 41.0 43 35.91443627790875 39.0 35.0 40.0 27.0 41.0 44 35.792284935052926 39.0 35.0 40.0 27.0 41.0 45 35.739587666990246 39.0 35.0 40.0 27.0 41.0 46 35.60752091711737 39.0 35.0 40.0 26.0 41.0 47 35.516810736683155 39.0 35.0 40.0 26.0 41.0 48 35.446771136689314 38.0 35.0 40.0 26.0 41.0 49 35.38673169078106 38.0 35.0 40.0 26.0 41.0 50 35.284025948011525 38.0 35.0 40.0 25.0 41.0 51 35.29013544122406 38.0 35.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 0.0 15 1.0 16 7.0 17 11.0 18 45.0 19 83.0 20 147.0 21 237.0 22 354.0 23 543.0 24 803.0 25 1293.0 26 1872.0 27 2122.0 28 1981.0 29 1980.0 30 2123.0 31 2534.0 32 3206.0 33 4301.0 34 6377.0 35 10538.0 36 9026.0 37 13118.0 38 22320.0 39 44767.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.355614108075624 24.48573937965146 29.621411732075998 16.537234780196922 2 31.52899120171343 26.111342239479807 30.220804634894222 12.138861923912541 3 27.428003513151207 25.14599608622629 35.267107351422986 12.158893049199525 4 25.176042774156766 26.981925761567975 34.675418727561286 13.16661273671397 5 19.2021448712615 41.6585771737623 27.41721752261206 11.722060432364136 6 20.545771121280758 40.796468358526326 28.74081264734433 9.916947872848581 7 81.86643862000955 4.798224934128415 11.044854312084931 2.2904821337770995 8 81.37182391100018 5.660333749364397 10.488605371423288 2.4792369682121453 9 74.68373934883434 9.669640518343888 11.721290004468482 3.9253301283532873 10 24.93721012650426 48.169463319927885 17.566526448789656 9.326800104778194 11 27.68070386292547 24.90793386646944 32.40034515169725 15.01101711890784 12 28.179941139308774 23.82394181728532 31.738547589331112 16.257569454074794 13 21.697560825282363 28.766236767900892 32.05827516602721 17.477927240789533 14 15.698238801830536 31.445014561087227 33.35875745388989 19.497989183192345 15 15.668192113900059 31.16380837917379 37.22707591796484 15.940923588961308 16 19.009537897348185 29.76008875329358 35.194687129231575 16.035686220126657 17 17.736791013729025 30.29476571287693 32.790181666897794 19.178261606496246 18 17.63124239202453 30.68845436755574 35.482056734310234 16.19824650610949 19 20.7098722630549 29.576726914128106 32.63224394828888 17.081156874528112 20 21.361654262777545 29.694602382163055 34.60608021695249 14.337663138106905 21 20.147459899228032 30.164563398511536 34.53751213423936 15.15046456802108 22 20.288448204132575 26.52583244734125 34.176951879073634 19.008767469452533 23 17.8492734864944 29.661473982649966 34.84568329250066 17.643569238354985 24 15.453242731012804 29.440361176597484 38.88195503782801 16.2244410545617 25 16.348479945761877 33.01437618453289 34.196212576464966 16.440931293240265 26 16.554954621796945 34.54521641319589 31.983543660148843 16.91628530485832 27 16.53030092913604 35.31564430884914 32.251652567836175 15.902402194178647 28 15.0133284025948 32.656897640949786 36.32182314057227 16.00795081588314 29 15.911647328926486 28.626018890892002 36.656959275181435 18.805374505000078 30 16.111188153900677 32.868765312254425 34.29405691921293 16.725989614631967 31 19.654386046009954 31.328679948843586 32.49433735496695 16.522596650179512 32 19.241436693939814 30.888765620425584 33.627636789472874 16.242160896161728 33 19.3801137151574 30.98429867948659 32.09294442133161 17.542643184024406 34 17.26991170896316 30.05670349312008 32.988181636080675 19.685203161836085 35 18.97486864204379 28.8633106827532 33.84720873973405 18.31461193546896 36 20.167491024515016 31.764742137783326 31.28553598668701 16.782230851014653 37 16.48176397170989 34.04135656943867 32.92423612074146 16.552643338109988 38 16.769133576788548 33.362609593368155 32.0436370360098 17.824619793833495 39 17.5757715835375 32.195411331453485 32.44580039754079 17.78301668746822 40 19.22602813602675 30.74469560393843 32.08292885868811 17.946347401346706 41 17.122759980893388 30.384905776668365 32.68771475677592 19.804619485662336 42 16.85927364057998 30.591380452703433 32.27168369312316 20.27766221359343 43 18.05574816252947 30.409559469329267 32.34410391531456 19.190588452826702 44 16.407032465831524 32.16151250404475 31.881847177922616 19.549607852201113 45 16.185919659779042 34.53905299003066 30.516648946825065 18.758378403365228 46 16.82614524106689 34.75092066133531 30.726975762338405 17.695958335259405 47 17.64279881045933 30.638376554338283 32.90728670703709 18.811537928165304 48 17.41552258124162 30.5952325921817 34.41963666620441 17.569608160372272 49 17.593491425137522 30.89030647621689 33.24242284164625 18.273779256999337 50 16.670518806144933 32.158430792462134 32.75474198369774 18.416308417695188 51 17.527234626111344 30.03513151204179 32.40650857486248 20.03112528698439 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 151.0 1 214.5 2 278.0 3 1541.5 4 2805.0 5 1973.0 6 1141.0 7 1049.0 8 957.0 9 988.5 10 1020.0 11 999.5 12 979.0 13 974.5 14 970.0 15 907.5 16 845.0 17 839.5 18 834.0 19 810.0 20 786.0 21 908.5 22 1031.0 23 1182.0 24 1333.0 25 1715.5 26 2551.0 27 3004.0 28 3795.0 29 4586.0 30 5280.5 31 5975.0 32 6464.0 33 6953.0 34 7617.5 35 8282.0 36 8683.0 37 9084.0 38 9386.5 39 9689.0 40 10429.5 41 11170.0 42 11200.5 43 11231.0 44 10855.5 45 10480.0 46 10073.5 47 9667.0 48 8510.0 49 7353.0 50 6506.5 51 5660.0 52 4575.0 53 3490.0 54 2803.0 55 2116.0 56 1900.5 57 1685.0 58 1525.5 59 1366.0 60 1207.5 61 1049.0 62 876.0 63 703.0 64 544.5 65 386.0 66 324.5 67 263.0 68 208.5 69 154.0 70 126.0 71 98.0 72 79.0 73 60.0 74 47.0 75 24.0 76 14.0 77 11.5 78 9.0 79 7.0 80 5.0 81 4.0 82 3.0 83 2.0 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 129798.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.52167213670472 #Duplication Level Percentage of deduplicated Percentage of total 1 74.92775748323427 42.35042142405892 2 10.773676462570197 12.178924174486509 3 4.883866746633226 8.28132945037674 4 2.754757101575705 6.228139108460839 5 1.9423695545499153 5.489298756529377 6 1.3685186194863965 4.641057643415153 7 1.0277520309688675 4.066318433257832 8 0.6733547789106373 3.0447310436216273 9 0.5534049397524671 2.81514353071696 >10 1.0645548225287607 7.813679717715219 >50 0.013630663540701162 0.5131049785050616 >100 0.014993729894771277 1.3836885005932296 >500 0.0 0.0 >1k 0.0013630663540701161 1.1941632382625311 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1550 1.1941632382625311 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 227 0.1748871323132868 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 202 0.15562643492195566 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 193 0.14869258386107645 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 190 0.1463813001741167 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 189 0.14561087227846348 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCG 164 0.12635017488713232 No Hit GAATCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTC 160 0.12326846330451932 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.704278956532459E-4 0.0 0.0 0.05778209217399344 0.0 2 7.704278956532459E-4 0.0 0.0 0.18721397864373873 0.0 3 7.704278956532459E-4 0.0 0.0 0.2534707776699179 0.0 4 7.704278956532459E-4 0.0 0.0 0.366723678330945 0.0 5 7.704278956532459E-4 0.0 0.0 0.6633384181574447 0.0 6 7.704278956532459E-4 0.0 0.0 0.833602983096812 0.0 7 7.704278956532459E-4 0.0 0.0 0.9923111296013806 0.0 8 7.704278956532459E-4 0.0 0.0 1.2480931909582582 0.0 9 7.704278956532459E-4 0.0 0.0 1.3374628268540347 0.0 10 7.704278956532459E-4 0.0 0.0 1.6926300867501811 0.0 11 7.704278956532459E-4 0.0 0.0 2.0223732260897704 0.0 12 7.704278956532459E-4 0.0 0.0 2.366754495446771 0.0 13 7.704278956532459E-4 0.0 0.0 2.4838595355860646 0.0 14 7.704278956532459E-4 0.0 0.0 2.5370190603861387 0.0 15 7.704278956532459E-4 0.0 0.0 2.632552119447141 0.0 16 7.704278956532459E-4 0.0 0.0 2.7812447033082175 0.0 17 7.704278956532459E-4 0.0 0.0 2.949968412456278 0.0 18 7.704278956532459E-4 0.0 0.0 3.141034530578283 0.0 19 7.704278956532459E-4 0.0 0.0 3.272007272839335 0.0 20 7.704278956532459E-4 0.0 0.0 3.4230111403873713 0.0 21 7.704278956532459E-4 0.0 0.0 3.587882710057166 0.0 22 7.704278956532459E-4 0.0 0.0 3.773555832909598 0.0 23 7.704278956532459E-4 0.0 0.0 3.968474090509869 0.0 24 7.704278956532459E-4 0.0 0.0 4.124100525431825 0.0 25 7.704278956532459E-4 0.0 0.0 4.262007118753756 0.0 26 7.704278956532459E-4 0.0 0.0 4.378341730997396 0.0 27 7.704278956532459E-4 0.0 0.0 4.487742492180157 0.0 28 7.704278956532459E-4 0.0 0.0 4.624108229710782 0.0 29 7.704278956532459E-4 0.0 0.0 4.795913650441455 0.0 30 7.704278956532459E-4 0.0 0.0 4.9838980569808475 0.0 31 7.704278956532459E-4 0.0 0.0 5.140294919798456 0.0 32 7.704278956532459E-4 0.0 0.0 5.2866762199725725 0.0 33 7.704278956532459E-4 0.0 0.0 5.443073082790182 0.0 34 0.0015408557913064917 0.0 0.0 5.6372209124948 0.0 35 0.0015408557913064917 0.0 0.0 5.815960184286353 0.0 36 0.0015408557913064917 0.0 0.0 6.01704186505185 0.0 37 0.0015408557913064917 0.0 0.0 6.194240281052096 0.0 38 0.0015408557913064917 0.0 0.0 6.386076827069754 0.0 39 0.0015408557913064917 0.0 0.0 6.584847224148292 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGTA 20 7.0101465E-4 45.000004 5 CGGGTGT 20 7.0101465E-4 45.000004 6 CAGTTGG 20 7.0101465E-4 45.000004 2 GGACTGC 20 7.0101465E-4 45.000004 8 GGACTCA 20 7.0101465E-4 45.000004 8 TACGGGA 80 0.0 45.000004 4 TAACGGG 30 2.1505912E-6 45.000004 3 ACGGGCA 20 7.0101465E-4 45.000004 5 TATTGCG 20 7.0101465E-4 45.000004 1 TACGAAT 40 6.7357178E-9 45.000004 12 CGGGACC 40 6.7357178E-9 45.000004 6 CGGGACA 30 2.1505912E-6 45.000004 6 CGTAAGG 20 7.0101465E-4 45.000004 2 ATACGGG 40 6.7357178E-9 45.000004 3 GTGACGG 20 7.0101465E-4 45.000004 2 AGGGCCG 20 7.0101465E-4 45.000004 6 TGAGCGG 30 2.1505912E-6 45.000004 2 ATGCATA 30 2.1505912E-6 45.000004 26 AGTACGG 20 7.0101465E-4 45.000004 2 CCAGGGA 25 3.871639E-5 45.0 4 >>END_MODULE