SRR3549364_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549364_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	85000
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	872	1.0258823529411765	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209	0.24588235294117647	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	170	0.2	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	151	0.1776470588235294	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	126	0.14823529411764708	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	125	0.14705882352941177	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGAC	35	1.1942575E-7	45.000004	5
CTTGGTC	35	1.1942575E-7	45.000004	29
CGGGATC	35	1.1942575E-7	45.000004	6
GACGGGA	75	0.0	45.000004	4
AGGGACC	70	0.0	45.000004	6
ATGGGCT	45	3.765308E-10	45.0	5
CTATGGG	45	3.765308E-10	45.0	3
ACACGGG	20	6.99644E-4	45.0	3
CGCGGGA	20	6.99644E-4	45.0	4
CGACGGG	25	3.860296E-5	45.0	3
ATGGCCT	25	3.860296E-5	45.0	11
TGGACGG	20	6.99644E-4	45.0	2
TATGGCC	25	3.860296E-5	45.0	10
GACCGAT	20	6.99644E-4	45.0	9
ATAGCGG	20	6.99644E-4	45.0	2
GGATCTA	25	3.860296E-5	45.0	8
GCACGGG	20	6.99644E-4	45.0	3
AATGGGC	20	6.99644E-4	45.0	4
AGGGTGC	20	6.99644E-4	45.0	6
TAACGGG	20	6.99644E-4	45.0	3